Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_324 and Pf6N2E2_325 are separated by 44 nucleotides Pf6N2E2_325 and Pf6N2E2_326 are separated by 33 nucleotides
Pf6N2E2_324 - Inosose isomerase (EC 5.3.99.-), at 392,759 to 393,850
_324
Pf6N2E2_325 - hypothetical protein, at 393,895 to 394,008
_325
Pf6N2E2_326 - Putative nucleoside transporter YegT, at 394,042 to 395,274
_326
Position (kb) 393
394
395 Strain fitness (log2 ratio) -1
0
1
2 at 392.921 kb on + strand, within Pf6N2E2_324 at 392.922 kb on - strand, within Pf6N2E2_324 at 392.922 kb on - strand, within Pf6N2E2_324 at 392.922 kb on - strand, within Pf6N2E2_324 at 392.922 kb on - strand, within Pf6N2E2_324 at 392.922 kb on - strand, within Pf6N2E2_324 at 392.957 kb on + strand, within Pf6N2E2_324 at 392.958 kb on - strand, within Pf6N2E2_324 at 393.215 kb on + strand, within Pf6N2E2_324 at 393.215 kb on + strand, within Pf6N2E2_324 at 393.216 kb on - strand, within Pf6N2E2_324 at 393.332 kb on + strand, within Pf6N2E2_324 at 393.332 kb on + strand, within Pf6N2E2_324 at 393.425 kb on + strand, within Pf6N2E2_324 at 393.425 kb on + strand, within Pf6N2E2_324 at 393.426 kb on - strand, within Pf6N2E2_324 at 393.461 kb on + strand, within Pf6N2E2_324 at 393.461 kb on + strand, within Pf6N2E2_324 at 393.462 kb on - strand, within Pf6N2E2_324 at 393.462 kb on - strand, within Pf6N2E2_324 at 393.462 kb on - strand, within Pf6N2E2_324 at 393.848 kb on + strand at 393.849 kb on - strand at 393.849 kb on - strand at 393.849 kb on - strand at 393.869 kb on + strand at 393.897 kb on - strand at 394.027 kb on - strand at 394.027 kb on - strand at 394.027 kb on - strand at 394.092 kb on + strand at 394.336 kb on + strand, within Pf6N2E2_326 at 394.336 kb on + strand, within Pf6N2E2_326 at 394.337 kb on - strand, within Pf6N2E2_326 at 394.337 kb on - strand, within Pf6N2E2_326 at 394.348 kb on + strand, within Pf6N2E2_326 at 394.348 kb on + strand, within Pf6N2E2_326 at 394.348 kb on + strand, within Pf6N2E2_326 at 394.348 kb on + strand, within Pf6N2E2_326 at 394.348 kb on + strand, within Pf6N2E2_326 at 394.349 kb on - strand, within Pf6N2E2_326 at 394.349 kb on - strand, within Pf6N2E2_326 at 394.349 kb on - strand, within Pf6N2E2_326 at 394.349 kb on - strand, within Pf6N2E2_326 at 394.360 kb on + strand, within Pf6N2E2_326 at 394.360 kb on + strand, within Pf6N2E2_326 at 394.360 kb on + strand, within Pf6N2E2_326 at 394.361 kb on - strand, within Pf6N2E2_326 at 394.539 kb on + strand, within Pf6N2E2_326 at 394.540 kb on - strand, within Pf6N2E2_326 at 394.582 kb on + strand, within Pf6N2E2_326 at 394.582 kb on + strand, within Pf6N2E2_326 at 394.583 kb on - strand, within Pf6N2E2_326 at 394.583 kb on - strand, within Pf6N2E2_326 at 394.690 kb on + strand, within Pf6N2E2_326 at 394.690 kb on + strand, within Pf6N2E2_326 at 394.742 kb on - strand, within Pf6N2E2_326 at 394.742 kb on - strand, within Pf6N2E2_326 at 394.742 kb on - strand, within Pf6N2E2_326 at 394.742 kb on - strand, within Pf6N2E2_326 at 394.742 kb on - strand, within Pf6N2E2_326 at 394.742 kb on - strand, within Pf6N2E2_326 at 394.742 kb on - strand, within Pf6N2E2_326 at 394.744 kb on + strand, within Pf6N2E2_326 at 394.916 kb on - strand, within Pf6N2E2_326 at 394.993 kb on + strand, within Pf6N2E2_326 at 394.994 kb on - strand, within Pf6N2E2_326
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 392,921 + Pf6N2E2_324 0.15 -0.1 392,922 - Pf6N2E2_324 0.15 -0.1 392,922 - Pf6N2E2_324 0.15 +0.9 392,922 - Pf6N2E2_324 0.15 -0.1 392,922 - Pf6N2E2_324 0.15 -0.7 392,922 - Pf6N2E2_324 0.15 +0.9 392,957 + Pf6N2E2_324 0.18 -0.1 392,958 - Pf6N2E2_324 0.18 +0.9 393,215 + Pf6N2E2_324 0.42 +1.2 393,215 + Pf6N2E2_324 0.42 +0.9 393,216 - Pf6N2E2_324 0.42 -0.4 393,332 + Pf6N2E2_324 0.52 -1.4 393,332 + Pf6N2E2_324 0.52 +0.9 393,425 + Pf6N2E2_324 0.61 +0.8 393,425 + Pf6N2E2_324 0.61 -0.1 393,426 - Pf6N2E2_324 0.61 +0.9 393,461 + Pf6N2E2_324 0.64 -0.1 393,461 + Pf6N2E2_324 0.64 -0.1 393,462 - Pf6N2E2_324 0.64 -0.6 393,462 - Pf6N2E2_324 0.64 +0.9 393,462 - Pf6N2E2_324 0.64 +0.2 393,848 + -0.6 393,849 - +0.9 393,849 - +0.9 393,849 - +0.9 393,869 + -0.6 393,897 - +0.9 394,027 - +0.9 394,027 - +0.9 394,027 - -0.1 394,092 + +0.9 394,336 + Pf6N2E2_326 0.24 -0.8 394,336 + Pf6N2E2_326 0.24 +0.2 394,337 - Pf6N2E2_326 0.24 +0.9 394,337 - Pf6N2E2_326 0.24 +0.9 394,348 + Pf6N2E2_326 0.25 -0.1 394,348 + Pf6N2E2_326 0.25 -1.1 394,348 + Pf6N2E2_326 0.25 -0.1 394,348 + Pf6N2E2_326 0.25 +0.9 394,348 + Pf6N2E2_326 0.25 +0.9 394,349 - Pf6N2E2_326 0.25 +0.9 394,349 - Pf6N2E2_326 0.25 +0.9 394,349 - Pf6N2E2_326 0.25 -0.8 394,349 - Pf6N2E2_326 0.25 +0.9 394,360 + Pf6N2E2_326 0.26 +0.9 394,360 + Pf6N2E2_326 0.26 +0.9 394,360 + Pf6N2E2_326 0.26 -1.4 394,361 - Pf6N2E2_326 0.26 +0.9 394,539 + Pf6N2E2_326 0.40 -0.1 394,540 - Pf6N2E2_326 0.40 -0.1 394,582 + Pf6N2E2_326 0.44 +0.9 394,582 + Pf6N2E2_326 0.44 +0.9 394,583 - Pf6N2E2_326 0.44 -0.8 394,583 - Pf6N2E2_326 0.44 +0.9 394,690 + Pf6N2E2_326 0.53 -0.9 394,690 + Pf6N2E2_326 0.53 +0.9 394,742 - Pf6N2E2_326 0.57 +0.9 394,742 - Pf6N2E2_326 0.57 +0.9 394,742 - Pf6N2E2_326 0.57 -0.1 394,742 - Pf6N2E2_326 0.57 +0.9 394,742 - Pf6N2E2_326 0.57 +1.9 394,742 - Pf6N2E2_326 0.57 -0.1 394,742 - Pf6N2E2_326 0.57 +0.9 394,744 + Pf6N2E2_326 0.57 -0.3 394,916 - Pf6N2E2_326 0.71 -0.2 394,993 + Pf6N2E2_326 0.77 +0.9 394,994 - Pf6N2E2_326 0.77 -0.1
Or see this region's nucleotide sequence