Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2360

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
2,793,667	+		Pf6N2E2_2359	0.39	+1.0
2,793,667	+		Pf6N2E2_2359	0.39	+1.0
2,793,667	+		Pf6N2E2_2359	0.39	-0.6
2,793,667	+		Pf6N2E2_2359	0.39	+1.0
2,793,668	-		Pf6N2E2_2359	0.39	+1.0
2,793,668	-		Pf6N2E2_2359	0.39	+1.0
2,793,934	+		Pf6N2E2_2359	0.63	+1.0
2,793,934	+		Pf6N2E2_2359	0.63	-1.6
2,793,934	+		Pf6N2E2_2359	0.63	-0.0
2,794,112	+				+1.0
2,794,115	+		Pf6N2E2_2359	0.79	+1.0
2,794,115	+		Pf6N2E2_2359	0.79	+1.0
2,794,115	+		Pf6N2E2_2359	0.79	-0.8
2,794,115	+		Pf6N2E2_2359	0.79	-0.3
2,794,116	-		Pf6N2E2_2359	0.79	+1.0
2,794,116	-		Pf6N2E2_2359	0.79	+1.0
2,794,261	-				+1.0
2,794,589	+				-0.0
2,794,589	+				+1.0
2,794,589	+				-0.0
2,794,589	+				+1.0
2,794,590	-				+1.0
2,794,590	-				-0.7
2,794,590	-				+1.0
2,794,593	+				+1.0
2,794,594	-				-0.6
2,794,601	-				+1.0
2,794,735	+				-0.0
2,794,736	-				-0.0
2,795,210	-		Pf6N2E2_2360	0.35	-0.0
2,795,305	-		Pf6N2E2_2360	0.41	+1.0
2,795,476	+				+1.0
2,795,477	-		Pf6N2E2_2360	0.51	+1.0
2,795,477	-		Pf6N2E2_2360	0.51	-0.0
2,795,480	+		Pf6N2E2_2360	0.51	+1.0
2,795,481	-		Pf6N2E2_2360	0.51	-0.6
2,795,500	+		Pf6N2E2_2360	0.52	-0.0
2,795,500	+		Pf6N2E2_2360	0.52	-0.0
2,795,501	-		Pf6N2E2_2360	0.52	-2.2
2,795,717	+		Pf6N2E2_2360	0.64	-1.0
2,795,718	-		Pf6N2E2_2360	0.64	+1.0
2,795,718	-		Pf6N2E2_2360	0.64	+1.0
2,795,718	-		Pf6N2E2_2360	0.64	-1.0
2,796,188	+				+1.0
2,796,221	-				+1.0
2,796,268	+				-0.4
2,796,269	-				+1.0
2,796,269	-				-0.6
2,796,369	+				-0.0
2,796,369	+				-0.5
2,796,369	+				-2.0
2,796,369	+				-0.0
2,796,369	+				-1.0
2,796,369	+				-0.0
2,796,370	-				-0.0
2,796,370	-				+0.6
2,796,370	-				-1.6
2,796,370	-				-1.4
2,796,370	-				+0.3
2,796,370	-				+1.0
2,796,429	+				-0.5
2,796,430	-				+1.0
2,796,430	-				-0.8
2,796,430	-				-0.0
2,796,430	-				-0.1
2,796,480	+		Pf6N2E2_2361	0.20	-0.9
2,796,481	-		Pf6N2E2_2361	0.20	-0.1
2,796,481	-		Pf6N2E2_2361	0.20	-0.0
2,796,481	-		Pf6N2E2_2361	0.20	+1.0
2,796,540	+		Pf6N2E2_2361	0.33	+1.0
2,796,541	-		Pf6N2E2_2361	0.33	+1.0
2,796,589	-		Pf6N2E2_2361	0.43	+1.0
2,796,589	-		Pf6N2E2_2361	0.43	-0.6
2,796,651	+		Pf6N2E2_2361	0.55	+1.0
2,796,663	+		Pf6N2E2_2361	0.58	-0.6
2,796,663	+		Pf6N2E2_2361	0.58	-0.3
2,796,663	+		Pf6N2E2_2361	0.58	+1.0
2,796,663	+		Pf6N2E2_2361	0.58	-0.8
2,796,664	-		Pf6N2E2_2361	0.58	-0.0
2,796,673	-		Pf6N2E2_2361	0.60	-0.0
2,796,726	+		Pf6N2E2_2361	0.71	-0.6
2,796,726	+		Pf6N2E2_2361	0.71	-0.0
2,796,727	-		Pf6N2E2_2361	0.71	-0.4
2,796,727	-		Pf6N2E2_2361	0.71	-0.0
2,796,727	-		Pf6N2E2_2361	0.71	-0.0
2,796,727	-		Pf6N2E2_2361	0.71	+1.0
2,796,747	+		Pf6N2E2_2361	0.75	+1.0
2,797,249	+				+1.0