Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1959

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
2,322,967	-				-0.5
2,322,967	-				+0.9
2,322,967	-				+0.9
2,323,029	+				+0.9
2,323,071	-				+0.9
2,323,201	+				+0.9
2,323,201	+				-1.7
2,323,202	-				-0.2
2,323,202	-				+0.9
2,323,459	+		Pf6N2E2_1958	0.41	+0.5
2,323,459	+		Pf6N2E2_1958	0.41	-0.6
2,323,459	+		Pf6N2E2_1958	0.41	-0.7
2,323,459	+		Pf6N2E2_1958	0.41	-1.1
2,323,462	-		Pf6N2E2_1958	0.42	-0.1
2,323,507	-		Pf6N2E2_1958	0.50	-0.1
2,323,777	-				-0.9
2,323,777	-				-1.1
2,323,800	+				+0.9
2,323,804	+				-0.1
2,323,805	-				+0.9
2,323,805	-				+0.9
2,323,805	-				+0.9
2,323,824	+				-0.4
2,323,999	-				-0.1
2,324,016	+				+0.7
2,324,123	+		Pf6N2E2_1959	0.20	-1.4
2,324,251	+		Pf6N2E2_1959	0.37	+0.9
2,324,578	-		Pf6N2E2_1959	0.79	-0.7
2,324,637	-		Pf6N2E2_1959	0.87	+0.9
2,324,664	+				-0.1
2,324,664	+				-0.7
2,324,664	+				+0.9
2,324,665	-				-0.7
2,324,665	-				-0.1
2,324,665	-				+0.9
2,324,665	-				-0.7
2,324,722	+				-0.6
2,324,748	-				-0.1
2,324,881	-				+0.9
2,324,881	-				+0.9
2,325,232	-		Pf6N2E2_1960	0.40	-0.1
2,325,232	-		Pf6N2E2_1960	0.40	+0.9
2,325,330	+		Pf6N2E2_1960	0.48	+0.9
2,325,331	-		Pf6N2E2_1960	0.49	-1.1
2,325,331	-		Pf6N2E2_1960	0.49	+0.9
2,325,355	+		Pf6N2E2_1960	0.51	+0.9
2,325,387	-		Pf6N2E2_1960	0.54	+0.9
2,325,502	+		Pf6N2E2_1960	0.64	-0.1
2,325,502	+		Pf6N2E2_1960	0.64	+0.9
2,325,503	-		Pf6N2E2_1960	0.64	+0.9
2,325,645	+		Pf6N2E2_1960	0.77	-0.1
2,325,645	+		Pf6N2E2_1960	0.77	+0.9
2,325,645	+		Pf6N2E2_1960	0.77	+0.9
2,325,646	-		Pf6N2E2_1960	0.77	+0.6
2,325,646	-		Pf6N2E2_1960	0.77	-0.3
2,325,646	-		Pf6N2E2_1960	0.77	+0.9