Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1498

Experiment: Ying_Nucleobase14 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 2
1,751,116	-		Pf6N2E2_1497	0.30	+0.8
1,751,116	-		Pf6N2E2_1497	0.30	+0.8
1,751,499	+		Pf6N2E2_1497	0.57	-0.4
1,751,499	+		Pf6N2E2_1497	0.57	+0.8
1,751,500	-		Pf6N2E2_1497	0.57	+0.8
1,751,987	-				+0.8
1,752,036	-				+0.8
1,752,146	-				-0.6
1,752,381	+		Pf6N2E2_1498	0.32	+0.8
1,752,381	+		Pf6N2E2_1498	0.32	+0.8
1,752,382	-		Pf6N2E2_1498	0.32	+0.2
1,752,382	-		Pf6N2E2_1498	0.32	+0.4
1,752,387	+		Pf6N2E2_1498	0.32	+0.8
1,752,388	-		Pf6N2E2_1498	0.33	-2.7
1,752,593	-		Pf6N2E2_1498	0.57	-0.8
1,752,608	-		Pf6N2E2_1498	0.58	-0.2
1,752,769	+		Pf6N2E2_1498	0.77	+0.8
1,752,770	-		Pf6N2E2_1498	0.77	-0.5
1,752,770	-		Pf6N2E2_1498	0.77	+0.8
1,752,970	+				-0.2
1,752,970	+				+0.8
1,752,971	-				-0.9
1,753,296	+		Pf6N2E2_1499	0.33	+0.8
1,753,379	+		Pf6N2E2_1499	0.43	+0.8
1,753,380	-		Pf6N2E2_1499	0.43	+0.8
1,753,453	+		Pf6N2E2_1499	0.52	-0.4
1,753,479	-		Pf6N2E2_1499	0.55	-0.2
1,753,862	-				-0.2
1,753,947	-				-0.2
1,753,957	+				+0.8