Experiment: Ying_Nucleobase14 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1278 and Pf6N2E2_1279 are separated by 213 nucleotides Pf6N2E2_1279 and Pf6N2E2_1280 overlap by 4 nucleotides Pf6N2E2_1280 and Pf6N2E2_1281 are separated by 22 nucleotides
Pf6N2E2_1278 - transcriptional regulator, MerR family, at 1,508,176 to 1,509,156
_1278
Pf6N2E2_1279 - Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system, at 1,509,370 to 1,510,314
_1279
Pf6N2E2_1280 - FIG00958542: hypothetical protein, at 1,510,311 to 1,510,790
_1280
Pf6N2E2_1281 - ATPase involved in DNA repair, at 1,510,813 to 1,511,460
_1281
Position (kb)
1509
1510
1511 Strain fitness (log2 ratio)
-2
-1
0
1 at 1508.408 kb on + strand, within Pf6N2E2_1278 at 1508.409 kb on - strand, within Pf6N2E2_1278 at 1508.446 kb on + strand, within Pf6N2E2_1278 at 1508.446 kb on + strand, within Pf6N2E2_1278 at 1508.447 kb on - strand, within Pf6N2E2_1278 at 1508.447 kb on - strand, within Pf6N2E2_1278 at 1508.447 kb on - strand, within Pf6N2E2_1278 at 1508.510 kb on + strand, within Pf6N2E2_1278 at 1508.510 kb on + strand, within Pf6N2E2_1278 at 1508.510 kb on + strand, within Pf6N2E2_1278 at 1508.510 kb on + strand, within Pf6N2E2_1278 at 1508.510 kb on + strand, within Pf6N2E2_1278 at 1508.511 kb on - strand, within Pf6N2E2_1278 at 1508.511 kb on - strand, within Pf6N2E2_1278 at 1508.511 kb on - strand, within Pf6N2E2_1278 at 1508.559 kb on - strand, within Pf6N2E2_1278 at 1508.582 kb on + strand, within Pf6N2E2_1278 at 1508.582 kb on + strand, within Pf6N2E2_1278 at 1508.583 kb on - strand, within Pf6N2E2_1278 at 1508.583 kb on - strand, within Pf6N2E2_1278 at 1508.583 kb on - strand, within Pf6N2E2_1278 at 1508.583 kb on - strand, within Pf6N2E2_1278 at 1508.583 kb on - strand, within Pf6N2E2_1278 at 1508.857 kb on - strand, within Pf6N2E2_1278 at 1509.063 kb on + strand at 1509.177 kb on + strand at 1509.183 kb on + strand at 1509.183 kb on + strand at 1509.184 kb on - strand at 1509.372 kb on - strand at 1509.449 kb on + strand at 1509.876 kb on - strand, within Pf6N2E2_1279 at 1509.876 kb on - strand, within Pf6N2E2_1279 at 1509.939 kb on - strand, within Pf6N2E2_1279 at 1510.399 kb on + strand, within Pf6N2E2_1280 at 1510.771 kb on + strand at 1510.771 kb on + strand at 1510.772 kb on - strand at 1510.772 kb on - strand at 1510.856 kb on + strand at 1510.856 kb on + strand at 1510.857 kb on - strand at 1510.961 kb on + strand, within Pf6N2E2_1281 at 1510.962 kb on - strand, within Pf6N2E2_1281 at 1511.109 kb on - strand, within Pf6N2E2_1281 at 1511.109 kb on - strand, within Pf6N2E2_1281
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 2 remove 1,508,408 + Pf6N2E2_1278 0.24 +0.8 1,508,409 - Pf6N2E2_1278 0.24 -0.2 1,508,446 + Pf6N2E2_1278 0.28 +0.8 1,508,446 + Pf6N2E2_1278 0.28 -0.8 1,508,447 - Pf6N2E2_1278 0.28 +0.2 1,508,447 - Pf6N2E2_1278 0.28 +0.8 1,508,447 - Pf6N2E2_1278 0.28 -0.2 1,508,510 + Pf6N2E2_1278 0.34 -1.5 1,508,510 + Pf6N2E2_1278 0.34 +0.2 1,508,510 + Pf6N2E2_1278 0.34 +0.8 1,508,510 + Pf6N2E2_1278 0.34 +0.8 1,508,510 + Pf6N2E2_1278 0.34 +0.8 1,508,511 - Pf6N2E2_1278 0.34 -1.1 1,508,511 - Pf6N2E2_1278 0.34 +0.8 1,508,511 - Pf6N2E2_1278 0.34 +0.8 1,508,559 - Pf6N2E2_1278 0.39 +0.8 1,508,582 + Pf6N2E2_1278 0.41 -1.8 1,508,582 + Pf6N2E2_1278 0.41 -0.2 1,508,583 - Pf6N2E2_1278 0.41 +0.8 1,508,583 - Pf6N2E2_1278 0.41 +0.8 1,508,583 - Pf6N2E2_1278 0.41 -0.2 1,508,583 - Pf6N2E2_1278 0.41 -0.2 1,508,583 - Pf6N2E2_1278 0.41 -0.5 1,508,857 - Pf6N2E2_1278 0.69 +0.8 1,509,063 + +0.8 1,509,177 + -0.2 1,509,183 + -0.2 1,509,183 + +0.8 1,509,184 - +0.8 1,509,372 - +0.8 1,509,449 + -0.2 1,509,876 - Pf6N2E2_1279 0.54 -0.2 1,509,876 - Pf6N2E2_1279 0.54 +0.8 1,509,939 - Pf6N2E2_1279 0.60 -1.4 1,510,399 + Pf6N2E2_1280 0.18 -0.6 1,510,771 + -0.5 1,510,771 + -1.5 1,510,772 - +0.8 1,510,772 - -0.2 1,510,856 + +0.8 1,510,856 + -0.2 1,510,857 - -0.2 1,510,961 + Pf6N2E2_1281 0.23 +0.8 1,510,962 - Pf6N2E2_1281 0.23 -0.2 1,511,109 - Pf6N2E2_1281 0.46 +0.8 1,511,109 - Pf6N2E2_1281 0.46 +0.8
Or see this region's nucleotide sequence