Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3420

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,976,487	+		Pf6N2E2_3419	0.61	+0.4
3,976,789	+		Pf6N2E2_3419	0.80	-1.0
3,976,789	+		Pf6N2E2_3419	0.80	+1.0
3,976,822	+		Pf6N2E2_3419	0.82	-0.4
3,976,823	-		Pf6N2E2_3419	0.82	+0.0
3,976,823	-		Pf6N2E2_3419	0.82	+1.0
3,976,853	+		Pf6N2E2_3419	0.83	+1.0
3,976,885	+		Pf6N2E2_3419	0.85	+0.0
3,976,886	-		Pf6N2E2_3419	0.85	+0.0
3,976,886	-		Pf6N2E2_3419	0.85	+1.0
3,976,886	-		Pf6N2E2_3419	0.85	+1.0
3,977,131	-				+1.0
3,977,251	-				+1.0
3,977,361	-				-1.0
3,977,427	+				+1.0
3,977,427	+				+0.0
3,977,427	+				-0.6
3,977,480	+		Pf6N2E2_3420	0.13	+0.0
3,977,481	-		Pf6N2E2_3420	0.14	+1.0
3,977,481	-		Pf6N2E2_3420	0.14	+0.0
3,977,481	-		Pf6N2E2_3420	0.14	+1.0
3,977,481	-		Pf6N2E2_3420	0.14	+0.0
3,977,513	+		Pf6N2E2_3420	0.17	-0.6
3,977,627	+		Pf6N2E2_3420	0.30	-0.7
3,977,661	+		Pf6N2E2_3420	0.34	+0.0
3,977,662	-		Pf6N2E2_3420	0.34	-1.7
3,977,712	-		Pf6N2E2_3420	0.39	+0.0
3,977,712	-		Pf6N2E2_3420	0.39	-1.0
3,977,735	+		Pf6N2E2_3420	0.42	+0.0
3,977,800	+		Pf6N2E2_3420	0.49	+1.0
3,977,844	+		Pf6N2E2_3420	0.54	+1.0
3,977,844	+		Pf6N2E2_3420	0.54	-1.4
3,977,844	+		Pf6N2E2_3420	0.54	+0.0
3,977,845	-		Pf6N2E2_3420	0.54	-0.6
3,977,948	+		Pf6N2E2_3420	0.65	+0.4
3,977,948	+		Pf6N2E2_3420	0.65	+0.0
3,977,948	+		Pf6N2E2_3420	0.65	+1.0
3,977,948	+		Pf6N2E2_3420	0.65	+0.0
3,977,948	+		Pf6N2E2_3420	0.65	-0.6
3,977,948	+		Pf6N2E2_3420	0.65	-0.6
3,977,948	+		Pf6N2E2_3420	0.65	-0.8
3,977,948	+		Pf6N2E2_3420	0.65	-0.6
3,977,948	+		Pf6N2E2_3420	0.65	-0.7
3,977,948	+		Pf6N2E2_3420	0.65	+0.0
3,977,949	-		Pf6N2E2_3420	0.66	+1.0
3,977,949	-		Pf6N2E2_3420	0.66	+1.0
3,977,949	-		Pf6N2E2_3420	0.66	+0.0
3,977,949	-		Pf6N2E2_3420	0.66	-0.6
3,977,949	-		Pf6N2E2_3420	0.66	+1.0
3,977,949	-		Pf6N2E2_3420	0.66	+1.0
3,977,949	-		Pf6N2E2_3420	0.66	+0.0
3,977,949	-		Pf6N2E2_3420	0.66	+1.0
3,977,949	-		Pf6N2E2_3420	0.66	+1.0
3,977,949	-		Pf6N2E2_3420	0.66	+0.0
3,977,949	-		Pf6N2E2_3420	0.66	+1.0
3,977,949	-		Pf6N2E2_3420	0.66	+0.0
3,977,949	-		Pf6N2E2_3420	0.66	-0.7
3,977,969	+		Pf6N2E2_3420	0.68	+0.0
3,978,045	+		Pf6N2E2_3420	0.76	+0.0
3,978,045	+		Pf6N2E2_3420	0.76	+1.0
3,978,045	+		Pf6N2E2_3420	0.76	-0.7
3,978,046	-		Pf6N2E2_3420	0.76	+1.0
3,978,072	-		Pf6N2E2_3420	0.79	+1.0
3,978,103	-		Pf6N2E2_3420	0.83	+0.0
3,978,122	+		Pf6N2E2_3420	0.85	-0.6
3,978,122	+		Pf6N2E2_3420	0.85	+2.0
3,978,122	+		Pf6N2E2_3420	0.85	+0.0
3,978,123	-		Pf6N2E2_3420	0.85	+1.0
3,978,123	-		Pf6N2E2_3420	0.85	+0.0
3,978,123	-		Pf6N2E2_3420	0.85	+0.0
3,978,123	-		Pf6N2E2_3420	0.85	+0.0
3,978,132	+		Pf6N2E2_3420	0.86	+0.2
3,978,132	+		Pf6N2E2_3420	0.86	+1.0
3,978,133	-		Pf6N2E2_3420	0.86	-1.0
3,978,133	-		Pf6N2E2_3420	0.86	+0.3
3,978,273	+				-1.6
3,978,274	-				+1.0
3,978,316	+				-0.6
3,978,316	+				-0.7
3,978,316	+				-0.3
3,978,316	+				+0.0
3,978,320	+				+0.0
3,978,321	-				-1.8
3,978,321	-				+1.0
3,978,321	-				+0.0
3,978,333	-				+1.0
3,978,755	+		Pf6N2E2_3421	0.53	-0.8
3,978,755	+		Pf6N2E2_3421	0.53	+0.0
3,978,756	-		Pf6N2E2_3421	0.53	-0.6
3,978,756	-		Pf6N2E2_3421	0.53	-0.8
3,978,881	+		Pf6N2E2_3421	0.70	+1.0
3,978,881	+		Pf6N2E2_3421	0.70	+1.0
3,978,884	+		Pf6N2E2_3421	0.70	-0.9
3,978,884	+		Pf6N2E2_3421	0.70	+1.0
3,978,924	+		Pf6N2E2_3421	0.75	-0.6
3,978,989	+		Pf6N2E2_3421	0.84	+1.0
3,978,990	-		Pf6N2E2_3421	0.84	+2.0
3,978,990	-		Pf6N2E2_3421	0.84	+1.0
3,978,995	+		Pf6N2E2_3421	0.85	-0.6
3,978,995	+		Pf6N2E2_3421	0.85	+1.0
3,978,995	+		Pf6N2E2_3421	0.85	+0.0
3,978,996	-		Pf6N2E2_3421	0.85	+1.0
3,979,154	+				-1.6
3,979,154	+				+0.0
3,979,194	+				-0.6
3,979,194	+				+0.0
3,979,194	+				+0.0
3,979,195	-				+0.0
3,979,195	-				+0.0
3,979,195	-				-0.6
3,979,206	+				-0.3
3,979,206	+				+1.0
3,979,206	+				+0.0
3,979,206	+				-2.3
3,979,206	-				+1.0
3,979,207	-				-0.9
3,979,211	+				+0.0
3,979,211	+				-1.0
3,979,212	-				+0.0
3,979,221	+				-1.1
3,979,234	-				+1.0
3,979,240	+				+1.0
3,979,241	-				+1.0