Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3319

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,834,169	+		Pf6N2E2_3318	0.35	+1.0
3,834,170	-		Pf6N2E2_3318	0.35	+1.0
3,834,170	-		Pf6N2E2_3318	0.35	-2.2
3,834,281	-		Pf6N2E2_3318	0.43	+0.0
3,834,297	+		Pf6N2E2_3318	0.45	-0.6
3,834,297	+		Pf6N2E2_3318	0.45	+1.0
3,834,297	+		Pf6N2E2_3318	0.45	+1.0
3,834,298	-		Pf6N2E2_3318	0.45	+0.0
3,834,298	-		Pf6N2E2_3318	0.45	+1.0
3,834,308	+		Pf6N2E2_3318	0.45	+1.0
3,834,308	+		Pf6N2E2_3318	0.45	+0.0
3,834,308	+		Pf6N2E2_3318	0.45	-0.6
3,834,309	-		Pf6N2E2_3318	0.45	+1.0
3,834,309	-		Pf6N2E2_3318	0.45	-1.5
3,834,309	-		Pf6N2E2_3318	0.45	+1.0
3,834,311	+		Pf6N2E2_3318	0.46	+1.0
3,834,311	+		Pf6N2E2_3318	0.46	+1.0
3,834,311	+		Pf6N2E2_3318	0.46	+1.0
3,834,357	+		Pf6N2E2_3318	0.49	+1.0
3,834,357	+		Pf6N2E2_3318	0.49	-1.0
3,834,357	+		Pf6N2E2_3318	0.49	+1.0
3,834,357	+		Pf6N2E2_3318	0.49	+1.0
3,834,358	-		Pf6N2E2_3318	0.49	+1.0
3,834,358	-		Pf6N2E2_3318	0.49	-0.4
3,834,358	-		Pf6N2E2_3318	0.49	+0.0
3,834,358	-		Pf6N2E2_3318	0.49	+0.3
3,834,358	-		Pf6N2E2_3318	0.49	-4.2
3,834,358	-		Pf6N2E2_3318	0.49	+1.0
3,834,358	-		Pf6N2E2_3318	0.49	+0.4
3,834,358	-		Pf6N2E2_3318	0.49	+0.0
3,834,436	+		Pf6N2E2_3318	0.55	+1.0
3,834,436	+		Pf6N2E2_3318	0.55	+0.0
3,834,436	+		Pf6N2E2_3318	0.55	+1.0
3,834,437	-		Pf6N2E2_3318	0.55	+1.0
3,834,437	-		Pf6N2E2_3318	0.55	+1.0
3,834,437	-		Pf6N2E2_3318	0.55	-2.1
3,834,437	-		Pf6N2E2_3318	0.55	-0.5
3,834,560	-		Pf6N2E2_3318	0.65	-0.9
3,834,682	-		Pf6N2E2_3318	0.74	+1.0
3,834,682	-		Pf6N2E2_3318	0.74	+1.0
3,834,682	-		Pf6N2E2_3318	0.74	+0.0
3,834,682	-		Pf6N2E2_3318	0.74	+1.0
3,834,682	-		Pf6N2E2_3318	0.74	+1.0
3,834,683	+		Pf6N2E2_3318	0.75	+1.0
3,834,696	-		Pf6N2E2_3318	0.76	+0.0
3,834,775	-		Pf6N2E2_3318	0.82	+1.0
3,834,775	-		Pf6N2E2_3318	0.82	-1.1
3,834,784	-		Pf6N2E2_3318	0.82	-1.6
3,834,826	+		Pf6N2E2_3318	0.86	+1.0
3,834,826	+		Pf6N2E2_3318	0.86	-0.6
3,834,826	+		Pf6N2E2_3318	0.86	-1.0
3,834,973	+				+1.0
3,834,973	+				-0.8
3,834,973	+				-0.7
3,834,973	+				+0.0
3,834,974	-				+1.0
3,834,976	+				+1.0
3,834,976	+				+1.0
3,834,976	+				+1.0
3,835,011	+				+1.0
3,835,011	+				+1.0
3,835,012	-				+1.0
3,835,016	-				+0.0
3,835,085	+				+1.0
3,835,134	-				+0.0
3,835,183	-		Pf6N2E2_3319	0.10	-0.6
3,835,354	+		Pf6N2E2_3319	0.21	-1.0
3,835,354	+		Pf6N2E2_3319	0.21	-1.2
3,835,355	-		Pf6N2E2_3319	0.21	+1.0
3,835,493	+		Pf6N2E2_3319	0.29	+1.0
3,835,493	+		Pf6N2E2_3319	0.29	+1.0
3,835,668	-		Pf6N2E2_3319	0.40	+0.0
3,835,702	+		Pf6N2E2_3319	0.42	-0.7
3,835,732	+		Pf6N2E2_3319	0.44	+0.0
3,835,732	+		Pf6N2E2_3319	0.44	-1.2
3,835,732	+		Pf6N2E2_3319	0.44	+0.0
3,835,732	+		Pf6N2E2_3319	0.44	+1.0
3,835,732	+		Pf6N2E2_3319	0.44	+1.0
3,835,732	+		Pf6N2E2_3319	0.44	+1.0
3,835,733	-		Pf6N2E2_3319	0.44	+0.0
3,835,733	-		Pf6N2E2_3319	0.44	+1.0
3,835,733	-		Pf6N2E2_3319	0.44	-1.6
3,835,964	+		Pf6N2E2_3319	0.58	-0.6
3,835,964	+		Pf6N2E2_3319	0.58	-1.6
3,835,964	+		Pf6N2E2_3319	0.58	+1.0
3,835,965	-		Pf6N2E2_3319	0.58	-2.2
3,835,965	-		Pf6N2E2_3319	0.58	-1.0
3,835,965	-		Pf6N2E2_3319	0.58	+1.0
3,836,200	+		Pf6N2E2_3319	0.73	+0.0
3,836,200	+		Pf6N2E2_3319	0.73	-1.4
3,836,200	+		Pf6N2E2_3319	0.73	+1.0
3,836,201	-		Pf6N2E2_3319	0.73	+1.0
3,836,271	-		Pf6N2E2_3319	0.77	-1.0
3,836,293	+		Pf6N2E2_3319	0.79	+0.7
3,836,293	+		Pf6N2E2_3319	0.79	-0.6
3,836,293	+		Pf6N2E2_3319	0.79	+1.0
3,836,294	-		Pf6N2E2_3319	0.79	+1.0
3,836,294	-		Pf6N2E2_3319	0.79	+1.0
3,836,294	-		Pf6N2E2_3319	0.79	-1.0
3,836,414	-		Pf6N2E2_3319	0.86	-0.6
3,836,461	-		Pf6N2E2_3319	0.89	+0.0
3,836,529	+				-0.6
3,836,529	+				-0.7
3,836,529	+				-0.7
3,836,529	+				+1.0
3,836,529	+				+1.0
3,836,529	+				-1.0
3,836,529	+				-2.8
3,836,529	+				+0.0
3,836,529	+				+0.0
3,836,530	-				-1.0
3,836,530	-				+1.0
3,836,530	-				-0.8
3,836,530	-				+1.0
3,836,530	-				+0.0
3,836,530	-				+0.0
3,836,611	+				+1.0
3,836,612	-				-0.6
3,836,650	+				-1.0
3,836,650	+				-0.7
3,836,651	-				+0.0
3,836,654	+				+0.0
3,836,654	+				-0.8
3,836,654	+				-0.8
3,836,654	+				-1.0
3,836,654	+				-0.7
3,836,654	+				+0.0
3,836,654	+				+1.0
3,836,654	+				+0.0
3,836,655	-				+0.0
3,836,655	-				-0.6
3,836,655	-				-1.0
3,836,676	+		Pf6N2E2_3320	0.17	+0.0
3,836,677	-		Pf6N2E2_3320	0.18	+0.0
3,836,706	-		Pf6N2E2_3320	0.42	+0.0
3,836,731	-		Pf6N2E2_3320	0.63	+0.0
3,836,731	-		Pf6N2E2_3320	0.63	-0.4
3,836,781	-				-0.8
3,836,781	-				+1.0
3,836,781	-				+1.0
3,836,850	+				+0.0
3,836,850	+				-0.6
3,836,851	-				+0.0
3,836,851	-				-0.6
3,836,851	-				-0.4
3,836,851	-				+1.0
3,836,851	-				+0.0
3,836,893	-				+0.0
3,836,991	-		Pf6N2E2_3321	0.17	+1.0
3,837,092	+		Pf6N2E2_3321	0.28	+1.0
3,837,159	-		Pf6N2E2_3321	0.35	+1.0
3,837,206	+		Pf6N2E2_3321	0.40	+1.0
3,837,207	-		Pf6N2E2_3321	0.40	+0.0
3,837,207	-		Pf6N2E2_3321	0.40	-0.8
3,837,330	+		Pf6N2E2_3321	0.53	-1.0
3,837,331	-		Pf6N2E2_3321	0.53	-1.4
3,837,331	-		Pf6N2E2_3321	0.53	+1.0
3,837,361	-		Pf6N2E2_3321	0.56	+1.0
3,837,481	-		Pf6N2E2_3321	0.68	+1.0
3,837,481	-		Pf6N2E2_3321	0.68	+0.3
3,837,536	-		Pf6N2E2_3321	0.74	+1.0