Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3089

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,575,342	+		Pf6N2E2_3087	0.86	+1.0
3,575,342	+		Pf6N2E2_3087	0.86	+1.0
3,575,342	+		Pf6N2E2_3087	0.86	+1.0
3,575,343	-		Pf6N2E2_3087	0.86	+1.0
3,575,343	-		Pf6N2E2_3087	0.86	+0.4
3,575,520	+				+1.0
3,575,520	+				-0.5
3,575,520	+				-0.8
3,575,521	-				+1.0
3,575,552	+				+1.0
3,575,552	+				+0.2
3,575,552	+				+0.0
3,575,553	-				+1.3
3,575,553	-				-1.0
3,575,553	-				+1.0
3,575,553	-				-0.8
3,575,757	-				+1.0
3,575,807	-				+0.0
3,575,807	-				-0.7
3,575,831	+				+0.0
3,575,832	-				-0.4
3,575,832	-				-0.5
3,575,832	-				-1.0
3,575,832	-				+0.6
3,575,858	+				+1.0
3,575,858	+				-0.3
3,575,858	+				+0.0
3,575,859	-				-0.8
3,576,014	+		Pf6N2E2_3088	0.37	+0.0
3,576,015	-		Pf6N2E2_3088	0.37	-1.0
3,576,262	+				-2.6
3,576,291	+				+0.0
3,576,292	-				-2.4
3,576,378	-		Pf6N2E2_3089	0.13	+0.0
3,576,378	-		Pf6N2E2_3089	0.13	+1.0
3,576,378	-		Pf6N2E2_3089	0.13	+1.0
3,576,445	+		Pf6N2E2_3089	0.28	+1.0
3,576,445	+		Pf6N2E2_3089	0.28	+1.0
3,576,445	+		Pf6N2E2_3089	0.28	+0.0
3,576,446	-		Pf6N2E2_3089	0.29	+1.0
3,576,446	-		Pf6N2E2_3089	0.29	-0.6
3,576,478	-		Pf6N2E2_3089	0.36	-0.9
3,576,589	+		Pf6N2E2_3089	0.62	+0.0
3,576,589	+		Pf6N2E2_3089	0.62	+0.0
3,576,589	+		Pf6N2E2_3089	0.62	+1.0
3,576,589	+		Pf6N2E2_3089	0.62	+1.0
3,576,590	-		Pf6N2E2_3089	0.63	+0.0
3,576,590	-		Pf6N2E2_3089	0.63	-1.4
3,576,590	-		Pf6N2E2_3089	0.63	+0.0
3,576,590	-		Pf6N2E2_3089	0.63	+1.0
3,576,623	-		Pf6N2E2_3089	0.70	-2.1
3,576,792	-				+0.0
3,577,188	+		Pf6N2E2_3090	0.59	+1.0
3,577,189	-		Pf6N2E2_3090	0.59	-1.8
3,577,278	+		Pf6N2E2_3090	0.72	-0.6
3,577,278	+		Pf6N2E2_3090	0.72	+0.0
3,577,278	+		Pf6N2E2_3090	0.72	+0.0
3,577,279	-		Pf6N2E2_3090	0.72	+1.0
3,577,279	-		Pf6N2E2_3090	0.72	-1.3
3,577,279	-		Pf6N2E2_3090	0.72	+0.1
3,577,347	+		Pf6N2E2_3090	0.82	+1.0
3,577,347	+		Pf6N2E2_3090	0.82	+0.0
3,577,347	+		Pf6N2E2_3090	0.82	+1.0
3,577,347	+		Pf6N2E2_3090	0.82	+1.0
3,577,347	+		Pf6N2E2_3090	0.82	+0.0
3,577,348	-		Pf6N2E2_3090	0.82	-0.9
3,577,348	-		Pf6N2E2_3090	0.82	+1.0
3,577,348	-		Pf6N2E2_3090	0.82	-0.6
3,577,348	-		Pf6N2E2_3090	0.82	-0.6
3,577,348	-		Pf6N2E2_3090	0.82	-0.6
3,577,348	-		Pf6N2E2_3090	0.82	+1.0
3,577,348	-		Pf6N2E2_3090	0.82	-0.6
3,577,520	+				+0.0
3,577,521	-				+0.0
3,577,686	+				+1.0
3,577,687	-				-1.7
3,577,687	-				-1.8
3,577,687	-				-0.6