Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2839

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,327,890	+		Pf6N2E2_2838	0.38	-0.8
3,327,890	+		Pf6N2E2_2838	0.38	+1.0
3,327,914	+		Pf6N2E2_2838	0.39	+1.0
3,327,915	-		Pf6N2E2_2838	0.40	-0.0
3,327,915	-		Pf6N2E2_2838	0.40	+1.0
3,327,947	+		Pf6N2E2_2838	0.42	+1.0
3,327,947	+		Pf6N2E2_2838	0.42	-0.0
3,327,948	-		Pf6N2E2_2838	0.42	-1.3
3,327,948	-		Pf6N2E2_2838	0.42	-0.6
3,327,948	-		Pf6N2E2_2838	0.42	-0.0
3,328,101	-		Pf6N2E2_2838	0.53	-0.9
3,328,179	+		Pf6N2E2_2838	0.59	-0.0
3,328,180	-		Pf6N2E2_2838	0.59	+1.0
3,328,295	+		Pf6N2E2_2838	0.68	+1.0
3,328,295	+		Pf6N2E2_2838	0.68	-0.6
3,328,295	+		Pf6N2E2_2838	0.68	-0.7
3,328,295	+		Pf6N2E2_2838	0.68	-0.0
3,328,296	-		Pf6N2E2_2838	0.68	-0.0
3,328,296	-		Pf6N2E2_2838	0.68	-0.6
3,328,296	-		Pf6N2E2_2838	0.68	-0.0
3,328,296	-		Pf6N2E2_2838	0.68	+1.0
3,328,370	-		Pf6N2E2_2838	0.73	-0.6
3,328,370	-		Pf6N2E2_2838	0.73	+1.0
3,328,370	-		Pf6N2E2_2838	0.73	-0.0
3,328,391	+		Pf6N2E2_2838	0.75	+1.0
3,328,597	-				-0.8
3,328,597	-				-1.0
3,328,662	+				+0.2
3,328,662	+				-0.0
3,328,662	+				+1.0
3,328,663	-				+1.0
3,328,663	-				-0.6
3,328,677	+				-1.0
3,328,732	-				-0.7
3,328,732	-				-0.2
3,328,824	+				-0.0
3,328,824	+				-0.0
3,328,825	-				-0.0
3,328,825	-				+1.0
3,328,870	+				-1.6
3,328,871	-				+1.0
3,328,989	+		Pf6N2E2_2839	0.14	+1.0
3,328,989	+		Pf6N2E2_2839	0.14	-1.0
3,328,990	-		Pf6N2E2_2839	0.14	-0.0
3,329,222	-		Pf6N2E2_2839	0.42	-0.6
3,329,291	+		Pf6N2E2_2839	0.50	+1.0
3,329,293	+		Pf6N2E2_2839	0.50	+1.0
3,329,293	+		Pf6N2E2_2839	0.50	-0.7
3,329,293	+		Pf6N2E2_2839	0.50	-0.0
3,329,293	+		Pf6N2E2_2839	0.50	+1.0
3,329,293	+		Pf6N2E2_2839	0.50	-1.0
3,329,293	+		Pf6N2E2_2839	0.50	+1.0
3,329,293	+		Pf6N2E2_2839	0.50	-0.5
3,329,294	-		Pf6N2E2_2839	0.50	-1.3
3,329,294	-		Pf6N2E2_2839	0.50	-0.2
3,329,294	-		Pf6N2E2_2839	0.50	-1.0
3,329,294	-		Pf6N2E2_2839	0.50	-0.8
3,329,294	-		Pf6N2E2_2839	0.50	-0.6
3,329,294	-		Pf6N2E2_2839	0.50	-0.4
3,329,300	+		Pf6N2E2_2839	0.51	-0.6
3,329,404	+		Pf6N2E2_2839	0.63	-0.0
3,329,404	+		Pf6N2E2_2839	0.63	+1.0
3,329,404	+		Pf6N2E2_2839	0.63	-1.0
3,329,404	+		Pf6N2E2_2839	0.63	+1.0
3,329,404	+		Pf6N2E2_2839	0.63	+1.0
3,329,405	-		Pf6N2E2_2839	0.64	+1.0
3,329,405	-		Pf6N2E2_2839	0.64	+1.3
3,329,405	-		Pf6N2E2_2839	0.64	-1.8
3,329,405	-		Pf6N2E2_2839	0.64	-1.0
3,329,405	-		Pf6N2E2_2839	0.64	-1.3
3,329,444	-		Pf6N2E2_2839	0.68	+1.0
3,329,444	-		Pf6N2E2_2839	0.68	+1.0
3,329,486	+		Pf6N2E2_2839	0.73	-0.0
3,329,486	+		Pf6N2E2_2839	0.73	+1.0
3,329,486	+		Pf6N2E2_2839	0.73	-0.6
3,329,486	+		Pf6N2E2_2839	0.73	-0.0
3,329,487	-		Pf6N2E2_2839	0.73	+1.0
3,329,487	-		Pf6N2E2_2839	0.73	-0.0
3,329,740	-				-0.3
3,329,742	+				-0.6
3,329,742	+				-0.0
3,329,742	+				-0.0
3,329,742	+				-0.9
3,329,742	+				-0.8
3,329,742	+				-0.2
3,329,743	-				-1.2
3,329,743	-				-1.4
3,329,743	-				-0.0
3,329,743	-				-0.0
3,329,743	-				+1.0
3,329,833	+				-0.7
3,329,957	-				+1.0
3,329,998	+				-0.0
3,329,998	+				+1.0
3,329,998	+				-0.0
3,329,998	+				+1.0
3,329,999	-				-0.6
3,329,999	-				+1.0
3,329,999	-				-0.9
3,330,032	+				+1.0
3,330,052	+				+1.0
3,330,053	-				-1.6
3,330,068	+				-0.0
3,330,069	-				+1.0
3,330,069	-				-1.5
3,330,070	+				-0.7
3,330,070	+				+1.0
3,330,071	-				+1.0
3,330,127	+				-0.6
3,330,127	+				-1.5
3,330,127	+				-0.0
3,330,127	+				-1.0
3,330,131	-				-0.6
3,330,153	+				+0.1
3,330,154	-				+1.0
3,330,170	-				-0.6
3,330,198	-				+0.2
3,330,198	-				-0.0
3,330,198	-				-0.0
3,330,239	+				+1.0
3,330,239	+				+1.0
3,330,240	-				+1.0
3,330,240	-				+1.0
3,330,274	+				-0.5
3,330,274	+				-0.0
3,330,274	+				+1.0
3,330,275	-				+1.0
3,330,275	-				-1.0
3,330,278	+				-0.4
3,330,279	-				-0.0
3,330,279	-				-0.6
3,330,282	+				+1.0
3,330,282	+				+1.0
3,330,282	+				+1.0
3,330,282	+				+1.0
3,330,338	-		Pf6N2E2_2840	0.24	+1.0
3,330,338	-		Pf6N2E2_2840	0.24	-0.3
3,330,338	-		Pf6N2E2_2840	0.24	+1.0
3,330,370	+		Pf6N2E2_2840	0.40	-0.9
3,330,370	+		Pf6N2E2_2840	0.40	+1.0
3,330,370	+		Pf6N2E2_2840	0.40	-1.6
3,330,370	+		Pf6N2E2_2840	0.40	-1.0
3,330,371	-		Pf6N2E2_2840	0.41	-0.0
3,330,371	-		Pf6N2E2_2840	0.41	+1.0
3,330,371	-		Pf6N2E2_2840	0.41	+1.0
3,330,371	-		Pf6N2E2_2840	0.41	+1.0
3,330,396	+		Pf6N2E2_2840	0.53	+1.0
3,330,396	+		Pf6N2E2_2840	0.53	-0.0
3,330,396	+		Pf6N2E2_2840	0.53	+1.0
3,330,396	+		Pf6N2E2_2840	0.53	-0.4
3,330,396	+		Pf6N2E2_2840	0.53	+1.0
3,330,396	+		Pf6N2E2_2840	0.53	-1.0
3,330,397	-		Pf6N2E2_2840	0.54	-0.8
3,330,409	-		Pf6N2E2_2840	0.60	+1.0
3,330,631	-				-0.7
3,330,657	+				+1.0
3,330,657	+				+1.0