Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2665

Experiment: Ying_Nucleobase14 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 2
3,137,603	-		Pf6N2E2_2663	0.87	-0.1
3,137,603	-		Pf6N2E2_2663	0.87	-1.1
3,137,605	-		Pf6N2E2_2663	0.87	+0.2
3,137,650	-				+0.9
3,137,651	+				+0.9
3,137,652	-				-0.1
3,137,662	+				-0.1
3,137,691	+				-0.1
3,137,718	-				-0.1
3,137,909	-				+0.9
3,137,921	+				+0.9
3,137,984	+				+0.9
3,138,006	+				-0.7
3,138,015	+				-0.1
3,138,033	+				-0.1
3,138,037	+				-2.3
3,138,066	+				-1.1
3,138,237	-				-0.1
3,138,237	-				-1.4
3,138,393	+				+0.9
3,138,394	-				-0.1
3,138,394	-				+0.9
3,138,394	-				-1.0
3,138,394	-				-0.4
3,138,394	-				-0.1
3,138,434	-				-0.1
3,138,439	+				-0.1
3,138,440	-				-0.1
3,138,629	+		Pf6N2E2_2665	0.28	-0.5
3,138,629	+		Pf6N2E2_2665	0.28	-0.1
3,138,630	-		Pf6N2E2_2665	0.28	+0.9
3,138,692	+		Pf6N2E2_2665	0.37	+0.9
3,138,692	+		Pf6N2E2_2665	0.37	-1.1
3,138,692	+		Pf6N2E2_2665	0.37	+0.9
3,138,692	+		Pf6N2E2_2665	0.37	-0.7
3,138,693	-		Pf6N2E2_2665	0.37	+0.9
3,138,693	-		Pf6N2E2_2665	0.37	-0.1
3,138,693	-		Pf6N2E2_2665	0.37	-2.3
3,138,693	-		Pf6N2E2_2665	0.37	-0.7
3,138,703	+		Pf6N2E2_2665	0.38	+0.9
3,138,704	-		Pf6N2E2_2665	0.38	-0.6
3,138,732	-		Pf6N2E2_2665	0.42	-0.1
3,138,752	+		Pf6N2E2_2665	0.45	-0.7
3,138,752	+		Pf6N2E2_2665	0.45	+0.9
3,138,753	-		Pf6N2E2_2665	0.45	-0.6
3,138,759	-		Pf6N2E2_2665	0.46	+0.9
3,138,759	-		Pf6N2E2_2665	0.46	-1.0
3,138,795	-		Pf6N2E2_2665	0.51	-0.1
3,138,795	-		Pf6N2E2_2665	0.51	-0.7
3,138,795	-		Pf6N2E2_2665	0.51	-0.7
3,138,924	-		Pf6N2E2_2665	0.69	+0.9
3,138,924	-		Pf6N2E2_2665	0.69	-0.1
3,138,968	+		Pf6N2E2_2665	0.75	-2.3
3,138,969	-		Pf6N2E2_2665	0.75	+0.9
3,138,969	-		Pf6N2E2_2665	0.75	+0.9
3,138,969	-		Pf6N2E2_2665	0.75	-0.1
3,138,969	-		Pf6N2E2_2665	0.75	-1.6
3,138,969	-		Pf6N2E2_2665	0.75	-1.1
3,138,969	-		Pf6N2E2_2665	0.75	+0.9
3,138,971	-		Pf6N2E2_2665	0.76	-0.7
3,138,971	-		Pf6N2E2_2665	0.76	-0.1
3,139,040	+		Pf6N2E2_2665	0.85	+0.9
3,139,041	-		Pf6N2E2_2665	0.85	+0.9
3,139,041	-		Pf6N2E2_2665	0.85	+0.9
3,139,041	-		Pf6N2E2_2665	0.85	-1.4
3,139,143	-				-0.1
3,139,143	-				-0.3
3,139,157	+				-0.2
3,139,158	-				+0.9
3,139,203	+				+0.9
3,139,203	+				-0.1
3,139,203	+				-0.5
3,139,204	-				-0.1
3,139,204	-				-0.2
3,139,204	-				-0.6
3,139,266	+				-1.9
3,139,439	+		Pf6N2E2_2666	0.25	-0.1
3,139,440	-		Pf6N2E2_2666	0.25	+0.9
3,139,440	-		Pf6N2E2_2666	0.25	-0.1
3,139,440	-		Pf6N2E2_2666	0.25	-1.3
3,139,440	-		Pf6N2E2_2666	0.25	-0.1
3,139,488	+		Pf6N2E2_2666	0.30	-0.7
3,139,513	+		Pf6N2E2_2666	0.33	+0.9
3,139,659	-		Pf6N2E2_2666	0.50	-1.5
3,140,090	+				-0.1
3,140,090	+				-0.1
3,140,090	+				+0.3
3,140,091	-				+0.9