Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_834 and Pf6N2E2_835 are separated by 56 nucleotides Pf6N2E2_835 and Pf6N2E2_836 are separated by 231 nucleotides
Pf6N2E2_834 - Cation efflux system protein, at 973,000 to 976,080
_834
Pf6N2E2_835 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 976,137 to 977,429
_835
Pf6N2E2_836 - ABC-type protease/lipase transport system, ATPase and permease components, at 977,661 to 979,376
_836
Position (kb) 976
977
978 Strain fitness (log2 ratio) -1
0
1
2 at 975.312 kb on + strand, within Pf6N2E2_834 at 975.312 kb on + strand, within Pf6N2E2_834 at 975.313 kb on - strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.371 kb on + strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.372 kb on - strand, within Pf6N2E2_834 at 975.409 kb on - strand, within Pf6N2E2_834 at 975.464 kb on + strand, within Pf6N2E2_834 at 975.465 kb on - strand, within Pf6N2E2_834 at 975.465 kb on - strand, within Pf6N2E2_834 at 975.710 kb on + strand, within Pf6N2E2_834 at 975.711 kb on - strand, within Pf6N2E2_834 at 975.860 kb on + strand at 975.861 kb on - strand at 975.861 kb on - strand at 976.015 kb on + strand at 976.015 kb on + strand at 976.015 kb on + strand at 976.015 kb on + strand at 976.016 kb on - strand at 976.067 kb on + strand at 976.068 kb on - strand at 976.077 kb on - strand at 976.079 kb on - strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.136 kb on + strand at 976.137 kb on - strand at 976.137 kb on - strand at 976.210 kb on + strand at 976.219 kb on + strand at 976.219 kb on + strand at 976.220 kb on - strand at 976.256 kb on + strand at 976.256 kb on + strand at 976.256 kb on + strand at 976.256 kb on + strand at 976.733 kb on + strand, within Pf6N2E2_835 at 976.733 kb on + strand, within Pf6N2E2_835 at 976.733 kb on + strand, within Pf6N2E2_835 at 976.733 kb on + strand, within Pf6N2E2_835 at 976.733 kb on + strand, within Pf6N2E2_835 at 976.734 kb on - strand, within Pf6N2E2_835 at 976.734 kb on - strand, within Pf6N2E2_835 at 977.078 kb on + strand, within Pf6N2E2_835 at 977.079 kb on - strand, within Pf6N2E2_835 at 977.171 kb on + strand, within Pf6N2E2_835 at 977.171 kb on + strand, within Pf6N2E2_835 at 977.171 kb on + strand, within Pf6N2E2_835 at 977.172 kb on - strand, within Pf6N2E2_835 at 977.181 kb on - strand, within Pf6N2E2_835 at 977.477 kb on + strand at 977.542 kb on + strand at 977.542 kb on + strand at 977.542 kb on + strand at 977.587 kb on - strand at 977.714 kb on + strand at 977.778 kb on + strand at 977.778 kb on + strand at 977.779 kb on - strand at 977.779 kb on - strand at 977.779 kb on - strand at 977.779 kb on - strand at 977.794 kb on - strand at 977.982 kb on - strand, within Pf6N2E2_836 at 977.982 kb on - strand, within Pf6N2E2_836 at 978.126 kb on + strand, within Pf6N2E2_836 at 978.127 kb on - strand, within Pf6N2E2_836
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 975,312 + Pf6N2E2_834 0.75 -0.2 975,312 + Pf6N2E2_834 0.75 +0.8 975,313 - Pf6N2E2_834 0.75 +0.8 975,371 + Pf6N2E2_834 0.77 +0.8 975,371 + Pf6N2E2_834 0.77 +0.8 975,371 + Pf6N2E2_834 0.77 +1.8 975,371 + Pf6N2E2_834 0.77 +0.8 975,371 + Pf6N2E2_834 0.77 +0.1 975,371 + Pf6N2E2_834 0.77 -0.7 975,371 + Pf6N2E2_834 0.77 +0.8 975,371 + Pf6N2E2_834 0.77 -0.8 975,371 + Pf6N2E2_834 0.77 +0.3 975,371 + Pf6N2E2_834 0.77 +0.8 975,371 + Pf6N2E2_834 0.77 -0.8 975,371 + Pf6N2E2_834 0.77 +0.8 975,372 - Pf6N2E2_834 0.77 +0.8 975,372 - Pf6N2E2_834 0.77 +0.8 975,372 - Pf6N2E2_834 0.77 +0.8 975,372 - Pf6N2E2_834 0.77 +0.8 975,372 - Pf6N2E2_834 0.77 -0.2 975,372 - Pf6N2E2_834 0.77 +0.8 975,372 - Pf6N2E2_834 0.77 -0.2 975,372 - Pf6N2E2_834 0.77 -0.2 975,372 - Pf6N2E2_834 0.77 -0.6 975,372 - Pf6N2E2_834 0.77 -1.3 975,409 - Pf6N2E2_834 0.78 +0.8 975,464 + Pf6N2E2_834 0.80 +0.8 975,465 - Pf6N2E2_834 0.80 -0.4 975,465 - Pf6N2E2_834 0.80 -0.7 975,710 + Pf6N2E2_834 0.88 +0.8 975,711 - Pf6N2E2_834 0.88 -0.2 975,860 + +0.8 975,861 - +0.8 975,861 - -0.7 976,015 + +0.8 976,015 + -0.5 976,015 + +0.8 976,015 + -0.3 976,016 - -0.5 976,067 + +0.8 976,068 - -1.4 976,077 - -0.2 976,079 - +0.8 976,136 + +0.8 976,136 + +0.8 976,136 + -1.1 976,136 + -1.1 976,136 + +0.3 976,136 + +0.8 976,136 + -0.2 976,136 + -0.7 976,136 + -0.5 976,136 + +0.8 976,137 - +0.8 976,137 - -0.7 976,210 + -0.7 976,219 + -0.4 976,219 + +0.8 976,220 - +0.8 976,256 + -0.6 976,256 + +0.8 976,256 + +0.8 976,256 + -0.4 976,733 + Pf6N2E2_835 0.46 -0.8 976,733 + Pf6N2E2_835 0.46 +0.8 976,733 + Pf6N2E2_835 0.46 -1.7 976,733 + Pf6N2E2_835 0.46 -0.7 976,733 + Pf6N2E2_835 0.46 +0.8 976,734 - Pf6N2E2_835 0.46 +0.8 976,734 - Pf6N2E2_835 0.46 +0.8 977,078 + Pf6N2E2_835 0.73 -0.2 977,079 - Pf6N2E2_835 0.73 -1.5 977,171 + Pf6N2E2_835 0.80 -0.2 977,171 + Pf6N2E2_835 0.80 +1.8 977,171 + Pf6N2E2_835 0.80 -0.5 977,172 - Pf6N2E2_835 0.80 +0.8 977,181 - Pf6N2E2_835 0.81 -0.2 977,477 + -0.7 977,542 + +0.8 977,542 + +0.8 977,542 + -1.5 977,587 - -0.2 977,714 + +0.8 977,778 + +0.8 977,778 + +0.8 977,779 - -0.7 977,779 - +0.8 977,779 - +0.8 977,779 - +0.8 977,794 - +0.8 977,982 - Pf6N2E2_836 0.19 -1.0 977,982 - Pf6N2E2_836 0.19 +0.8 978,126 + Pf6N2E2_836 0.27 -0.8 978,127 - Pf6N2E2_836 0.27 +0.8
Or see this region's nucleotide sequence