Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5638

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
6,451,069	+		Pf6N2E2_5635	0.82	-0.8
6,451,117	-		Pf6N2E2_5635	0.86	-0.4
6,451,117	-		Pf6N2E2_5635	0.86	+1.0
6,451,316	+				-1.0
6,451,316	+				-0.5
6,451,317	-				+1.0
6,451,317	-				-0.6
6,451,320	+				+1.0
6,451,320	+				-0.0
6,451,329	+				-0.6
6,451,329	+				-0.0
6,451,367	+				+1.0
6,451,373	+				-1.5
6,451,373	+				+2.6
6,451,373	+				-1.0
6,451,373	+				-0.2
6,451,740	+		Pf6N2E2_5637	0.56	-0.0
6,451,740	+		Pf6N2E2_5637	0.56	-1.1
6,451,740	+		Pf6N2E2_5637	0.56	-1.8
6,451,741	-		Pf6N2E2_5637	0.57	-0.6
6,451,741	-		Pf6N2E2_5637	0.57	+2.0
6,451,741	-		Pf6N2E2_5637	0.57	+1.0
6,451,741	-		Pf6N2E2_5637	0.57	+1.0
6,451,741	-		Pf6N2E2_5637	0.57	+1.0
6,451,787	+		Pf6N2E2_5637	0.89	-0.0
6,451,829	+				-0.7
6,451,829	+				-0.6
6,451,830	-				-0.0
6,451,870	+				-1.8
6,451,871	-				+1.0
6,451,871	-				+1.0
6,451,871	-				-0.6
6,451,871	-				+0.1
6,451,871	-				-0.0
6,451,899	+				+1.0
6,451,900	-				+1.0
6,451,900	-				+1.0
6,451,931	+				+1.0
6,451,931	+				+1.0
6,451,932	-				-0.2
6,451,949	+				+1.0
6,452,305	+		Pf6N2E2_5638	0.35	-0.0
6,452,306	-		Pf6N2E2_5638	0.35	-0.0
6,452,498	-		Pf6N2E2_5638	0.54	+1.0
6,452,498	-		Pf6N2E2_5638	0.54	+1.0
6,452,640	+		Pf6N2E2_5638	0.68	+1.0
6,452,640	+		Pf6N2E2_5638	0.68	-0.6
6,452,640	+		Pf6N2E2_5638	0.68	+1.0
6,452,640	+		Pf6N2E2_5638	0.68	-0.0
6,452,640	+		Pf6N2E2_5638	0.68	-0.0
6,452,640	+		Pf6N2E2_5638	0.68	+1.0
6,452,640	+		Pf6N2E2_5638	0.68	-0.0
6,452,640	+		Pf6N2E2_5638	0.68	+1.0
6,452,641	-		Pf6N2E2_5638	0.68	-1.3
6,452,641	-		Pf6N2E2_5638	0.68	-0.0
6,452,641	-		Pf6N2E2_5638	0.68	-1.5
6,452,641	-		Pf6N2E2_5638	0.68	-0.0
6,452,672	-		Pf6N2E2_5638	0.71	-1.6
6,453,001	+				+1.0
6,453,096	-				-0.0
6,453,131	+				-0.6
6,453,131	+				-1.5
6,453,131	+				-0.6
6,453,131	+				-0.8
6,453,132	-				-0.1
6,453,132	-				+1.0
6,453,132	-				-0.0
6,453,132	-				-0.4
6,453,132	-				+1.0
6,453,132	-				+1.0
6,453,132	-				+0.2
6,453,132	-				+1.0
6,453,132	-				-0.0
6,453,132	-				-0.6
6,453,135	+				+1.0
6,453,135	+				-0.6
6,453,135	+				+1.0
6,453,135	+				+1.0
6,453,135	+				+1.0
6,453,136	-				+1.0
6,453,136	-				-1.3
6,453,136	-				-0.5
6,453,136	-				+1.0
6,453,136	-				+1.0
6,453,136	-				-0.4
6,453,197	+				+1.0
6,453,197	+				-0.6
6,453,330	-				-0.0
6,453,330	-				-0.0
6,453,330	-				+0.1
6,453,461	+		Pf6N2E2_5639	0.15	-0.0
6,453,461	+		Pf6N2E2_5639	0.15	-0.0
6,453,462	-		Pf6N2E2_5639	0.15	-0.8
6,453,462	-		Pf6N2E2_5639	0.15	-0.8
6,453,882	-		Pf6N2E2_5639	0.41	+1.0
6,453,960	+		Pf6N2E2_5639	0.46	-0.0