Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5549

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
6,363,512	+		Pf6N2E2_5548	0.40	+1.0
6,363,512	+		Pf6N2E2_5548	0.40	-1.0
6,363,512	+		Pf6N2E2_5548	0.40	+1.0
6,363,512	+		Pf6N2E2_5548	0.40	+1.0
6,363,513	-		Pf6N2E2_5548	0.41	-0.0
6,363,513	-		Pf6N2E2_5548	0.41	-0.0
6,363,513	-		Pf6N2E2_5548	0.41	+0.4
6,363,545	+		Pf6N2E2_5548	0.43	-0.0
6,363,546	-		Pf6N2E2_5548	0.43	+1.0
6,363,546	-		Pf6N2E2_5548	0.43	+1.0
6,363,797	+		Pf6N2E2_5548	0.64	+1.0
6,363,797	+		Pf6N2E2_5548	0.64	-0.8
6,363,797	+		Pf6N2E2_5548	0.64	+1.0
6,363,797	+		Pf6N2E2_5548	0.64	-0.3
6,363,797	+		Pf6N2E2_5548	0.64	-1.3
6,363,797	+		Pf6N2E2_5548	0.64	+1.0
6,363,797	+		Pf6N2E2_5548	0.64	+0.4
6,363,798	-		Pf6N2E2_5548	0.65	+1.0
6,363,798	-		Pf6N2E2_5548	0.65	-0.4
6,363,798	-		Pf6N2E2_5548	0.65	-0.8
6,363,798	-		Pf6N2E2_5548	0.65	+1.0
6,363,929	+		Pf6N2E2_5548	0.76	-0.6
6,363,929	+		Pf6N2E2_5548	0.76	-0.6
6,363,930	-		Pf6N2E2_5548	0.76	+1.0
6,363,930	-		Pf6N2E2_5548	0.76	-0.6
6,364,250	-				-0.0
6,364,250	-				-0.0
6,364,250	-				-0.6
6,364,457	+				+1.0
6,364,457	+				+1.0
6,364,457	+				+1.0
6,364,457	+				+1.0
6,364,458	-				+1.0
6,364,458	-				+1.0
6,364,458	-				-0.3
6,364,458	-				+1.0
6,364,458	-				+1.0
6,364,476	-				-0.6
6,364,476	-				-0.0
6,364,691	-		Pf6N2E2_5549	0.24	-0.6
6,364,691	-		Pf6N2E2_5549	0.24	+1.0
6,364,700	+		Pf6N2E2_5549	0.25	-0.0
6,364,700	+		Pf6N2E2_5549	0.25	-0.6
6,364,700	+		Pf6N2E2_5549	0.25	+1.0
6,364,700	+		Pf6N2E2_5549	0.25	+1.0
6,364,701	-		Pf6N2E2_5549	0.25	-0.6
6,364,701	-		Pf6N2E2_5549	0.25	-1.0
6,364,701	-		Pf6N2E2_5549	0.25	-0.6
6,364,701	-		Pf6N2E2_5549	0.25	-0.0
6,364,701	-		Pf6N2E2_5549	0.25	-0.0
6,364,741	-		Pf6N2E2_5549	0.29	+1.0
6,364,748	+		Pf6N2E2_5549	0.30	+1.0
6,364,748	+		Pf6N2E2_5549	0.30	+1.0
6,364,749	-		Pf6N2E2_5549	0.30	-0.4
6,365,023	+		Pf6N2E2_5549	0.60	-1.2
6,365,242	+		Pf6N2E2_5549	0.84	-1.1
6,365,242	+		Pf6N2E2_5549	0.84	+1.0
6,365,298	+				-0.6
6,365,300	+				-1.5
6,365,300	+				+1.0
6,365,300	+				+1.0
6,365,300	+				-0.9
6,365,300	+				+1.0
6,365,300	+				-0.0
6,365,301	-				+1.0
6,365,301	-				+1.0
6,365,301	-				-0.6
6,365,345	+				+1.0
6,365,345	+				-1.2
6,365,346	-				+0.3
6,365,346	-				-0.0
6,365,346	-				+1.0
6,365,463	+		Pf6N2E2_5550	0.19	-0.0
6,365,463	+		Pf6N2E2_5550	0.19	-1.6
6,365,463	+		Pf6N2E2_5550	0.19	-1.5
6,365,464	-		Pf6N2E2_5550	0.19	-1.9
6,365,464	-		Pf6N2E2_5550	0.19	-0.0
6,365,464	-		Pf6N2E2_5550	0.19	-0.0
6,365,464	-		Pf6N2E2_5550	0.19	-0.6
6,365,464	-		Pf6N2E2_5550	0.19	+1.0
6,365,464	-		Pf6N2E2_5550	0.19	-0.6
6,365,788	+				-1.0
6,365,788	+				+1.0
6,365,789	-				-0.0
6,365,789	-				-0.0
6,365,854	+				-0.0
6,365,855	-				-1.0
6,365,855	-				+1.0
6,365,898	-				+1.0
6,365,942	+		Pf6N2E2_5551	0.12	+1.0
6,365,943	-		Pf6N2E2_5551	0.12	-1.1
6,365,943	-		Pf6N2E2_5551	0.12	-1.0
6,365,943	-		Pf6N2E2_5551	0.12	-1.0
6,365,943	-		Pf6N2E2_5551	0.12	-0.3
6,365,943	-		Pf6N2E2_5551	0.12	-1.3
6,365,943	-		Pf6N2E2_5551	0.12	-1.3
6,365,943	-		Pf6N2E2_5551	0.12	-0.0
6,365,963	-		Pf6N2E2_5551	0.14	-0.6
6,365,963	-		Pf6N2E2_5551	0.14	-0.4
6,365,963	-		Pf6N2E2_5551	0.14	+1.0
6,365,969	+		Pf6N2E2_5551	0.15	-0.0
6,365,974	+		Pf6N2E2_5551	0.16	+1.0
6,366,041	+		Pf6N2E2_5551	0.23	-1.0
6,366,098	+		Pf6N2E2_5551	0.29	-0.0
6,366,098	+		Pf6N2E2_5551	0.29	+2.3
6,366,098	+		Pf6N2E2_5551	0.29	+1.4
6,366,099	-		Pf6N2E2_5551	0.29	+1.0
6,366,099	-		Pf6N2E2_5551	0.29	+1.0
6,366,170	+		Pf6N2E2_5551	0.37	+1.0
6,366,171	-		Pf6N2E2_5551	0.37	+1.0