Experiment: Ying_Nucleobase14 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_467 and Pf6N2E2_468 are separated by 6 nucleotides Pf6N2E2_468 and Pf6N2E2_469 are separated by 251 nucleotides Pf6N2E2_469 and Pf6N2E2_470 overlap by 4 nucleotides Pf6N2E2_470 and Pf6N2E2_471 overlap by 1 nucleotides
Pf6N2E2_467 - Sensory box/GGDEF family protein, at 532,363 to 534,441
_467
Pf6N2E2_468 - DNA alkylation repair enzyme, at 534,448 to 535,551
_468
Pf6N2E2_469 - lipoprotein, putative, at 535,803 to 536,111
_469
Pf6N2E2_470 - hypothetical protein, at 536,108 to 536,431
_470
Pf6N2E2_471 - putative metalloprotease, at 536,431 to 537,492
_471
Position (kb) 534
535
536 Strain fitness (log2 ratio) -2
-1
0
1 at 533.716 kb on + strand, within Pf6N2E2_467 at 533.717 kb on - strand, within Pf6N2E2_467 at 533.719 kb on + strand, within Pf6N2E2_467 at 533.905 kb on + strand, within Pf6N2E2_467 at 533.905 kb on + strand, within Pf6N2E2_467 at 533.905 kb on + strand, within Pf6N2E2_467 at 533.906 kb on - strand, within Pf6N2E2_467 at 533.906 kb on - strand, within Pf6N2E2_467 at 533.906 kb on - strand, within Pf6N2E2_467 at 533.919 kb on + strand, within Pf6N2E2_467 at 533.919 kb on + strand, within Pf6N2E2_467 at 533.920 kb on - strand, within Pf6N2E2_467 at 534.160 kb on + strand, within Pf6N2E2_467 at 534.160 kb on + strand, within Pf6N2E2_467 at 534.160 kb on + strand, within Pf6N2E2_467 at 534.161 kb on - strand, within Pf6N2E2_467 at 534.651 kb on - strand, within Pf6N2E2_468 at 534.971 kb on + strand, within Pf6N2E2_468 at 534.971 kb on + strand, within Pf6N2E2_468 at 534.972 kb on - strand, within Pf6N2E2_468 at 534.972 kb on - strand, within Pf6N2E2_468 at 534.972 kb on - strand, within Pf6N2E2_468 at 534.972 kb on - strand, within Pf6N2E2_468 at 534.972 kb on - strand, within Pf6N2E2_468 at 535.096 kb on + strand, within Pf6N2E2_468 at 535.208 kb on + strand, within Pf6N2E2_468 at 535.209 kb on - strand, within Pf6N2E2_468 at 535.251 kb on - strand, within Pf6N2E2_468 at 535.251 kb on - strand, within Pf6N2E2_468 at 535.262 kb on + strand, within Pf6N2E2_468 at 535.262 kb on + strand, within Pf6N2E2_468 at 535.262 kb on + strand, within Pf6N2E2_468 at 535.262 kb on + strand, within Pf6N2E2_468 at 535.262 kb on + strand, within Pf6N2E2_468 at 535.263 kb on - strand, within Pf6N2E2_468 at 535.263 kb on - strand, within Pf6N2E2_468 at 535.263 kb on - strand, within Pf6N2E2_468 at 535.263 kb on - strand, within Pf6N2E2_468 at 535.354 kb on + strand, within Pf6N2E2_468 at 535.460 kb on + strand at 535.581 kb on + strand at 535.582 kb on - strand at 535.582 kb on - strand at 535.582 kb on - strand at 535.582 kb on - strand at 535.584 kb on - strand at 535.584 kb on - strand at 535.740 kb on - strand at 536.052 kb on + strand, within Pf6N2E2_469 at 536.052 kb on + strand, within Pf6N2E2_469 at 536.053 kb on - strand, within Pf6N2E2_469 at 536.110 kb on - strand at 536.110 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2 remove 533,716 + Pf6N2E2_467 0.65 +0.9 533,717 - Pf6N2E2_467 0.65 +0.9 533,719 + Pf6N2E2_467 0.65 -0.1 533,905 + Pf6N2E2_467 0.74 +0.9 533,905 + Pf6N2E2_467 0.74 -1.7 533,905 + Pf6N2E2_467 0.74 -0.1 533,906 - Pf6N2E2_467 0.74 +0.9 533,906 - Pf6N2E2_467 0.74 +0.9 533,906 - Pf6N2E2_467 0.74 +0.3 533,919 + Pf6N2E2_467 0.75 +0.9 533,919 + Pf6N2E2_467 0.75 -0.1 533,920 - Pf6N2E2_467 0.75 -0.1 534,160 + Pf6N2E2_467 0.86 -0.7 534,160 + Pf6N2E2_467 0.86 -0.5 534,160 + Pf6N2E2_467 0.86 +0.9 534,161 - Pf6N2E2_467 0.86 +0.2 534,651 - Pf6N2E2_468 0.18 +0.9 534,971 + Pf6N2E2_468 0.47 -0.1 534,971 + Pf6N2E2_468 0.47 -0.7 534,972 - Pf6N2E2_468 0.47 -0.7 534,972 - Pf6N2E2_468 0.47 -0.5 534,972 - Pf6N2E2_468 0.47 -0.1 534,972 - Pf6N2E2_468 0.47 +0.9 534,972 - Pf6N2E2_468 0.47 +0.9 535,096 + Pf6N2E2_468 0.59 +0.9 535,208 + Pf6N2E2_468 0.69 -2.5 535,209 - Pf6N2E2_468 0.69 -1.1 535,251 - Pf6N2E2_468 0.73 -0.7 535,251 - Pf6N2E2_468 0.73 +0.9 535,262 + Pf6N2E2_468 0.74 +0.9 535,262 + Pf6N2E2_468 0.74 -1.2 535,262 + Pf6N2E2_468 0.74 -0.3 535,262 + Pf6N2E2_468 0.74 -0.1 535,262 + Pf6N2E2_468 0.74 -1.1 535,263 - Pf6N2E2_468 0.74 +0.9 535,263 - Pf6N2E2_468 0.74 -0.1 535,263 - Pf6N2E2_468 0.74 -0.7 535,263 - Pf6N2E2_468 0.74 +0.9 535,354 + Pf6N2E2_468 0.82 +0.9 535,460 + -0.1 535,581 + +0.9 535,582 - +0.9 535,582 - +0.9 535,582 - +0.9 535,582 - +0.9 535,584 - +0.9 535,584 - -2.3 535,740 - -0.8 536,052 + Pf6N2E2_469 0.81 -0.1 536,052 + Pf6N2E2_469 0.81 -1.1 536,053 - Pf6N2E2_469 0.81 +0.9 536,110 - +0.9 536,110 - -0.2
Or see this region's nucleotide sequence