Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3678

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
4,286,047	+		Pf6N2E2_3677	0.71	+1.1
4,286,047	+		Pf6N2E2_3677	0.71	+1.1
4,286,047	+		Pf6N2E2_3677	0.71	-0.5
4,286,047	+		Pf6N2E2_3677	0.71	+0.1
4,286,048	-		Pf6N2E2_3677	0.71	+0.1
4,286,048	-		Pf6N2E2_3677	0.71	-0.5
4,286,110	+		Pf6N2E2_3677	0.73	+1.1
4,286,110	+		Pf6N2E2_3677	0.73	+1.1
4,286,111	-		Pf6N2E2_3677	0.73	+0.1
4,286,111	-		Pf6N2E2_3677	0.73	-0.9
4,286,111	-		Pf6N2E2_3677	0.73	-0.5
4,286,536	+		Pf6N2E2_3677	0.89	+1.1
4,286,552	-		Pf6N2E2_3677	0.90	+2.1
4,286,552	-		Pf6N2E2_3677	0.90	-0.5
4,286,841	+				-0.2
4,286,841	+				+1.7
4,286,841	+				-1.1
4,286,843	+				-0.9
4,286,843	+				-1.0
4,286,843	+				+0.1
4,286,844	-				+0.1
4,286,881	-				-0.2
4,286,881	-				+1.1
4,286,881	-				-0.2
4,287,181	+		Pf6N2E2_3678	0.41	-0.5
4,287,181	+		Pf6N2E2_3678	0.41	+0.1
4,287,182	-		Pf6N2E2_3678	0.41	+0.1
4,287,182	-		Pf6N2E2_3678	0.41	-0.2
4,287,235	+		Pf6N2E2_3678	0.49	+1.1
4,287,235	+		Pf6N2E2_3678	0.49	-0.5
4,287,257	-		Pf6N2E2_3678	0.52	+0.1
4,287,257	-		Pf6N2E2_3678	0.52	+1.1
4,287,352	+		Pf6N2E2_3678	0.67	+1.1
4,287,352	+		Pf6N2E2_3678	0.67	-0.1
4,287,352	+		Pf6N2E2_3678	0.67	+0.1
4,287,352	+		Pf6N2E2_3678	0.67	+1.1
4,287,352	+		Pf6N2E2_3678	0.67	+0.5
4,287,352	+		Pf6N2E2_3678	0.67	+0.1
4,287,353	-		Pf6N2E2_3678	0.67	-0.3
4,287,353	-		Pf6N2E2_3678	0.67	-0.5
4,287,353	-		Pf6N2E2_3678	0.67	-0.5
4,287,353	-		Pf6N2E2_3678	0.67	+1.1
4,287,472	+		Pf6N2E2_3678	0.86	+1.1
4,287,472	+		Pf6N2E2_3678	0.86	+0.1
4,287,473	-		Pf6N2E2_3678	0.86	+0.1
4,287,487	+		Pf6N2E2_3678	0.88	+1.1
4,287,488	-		Pf6N2E2_3678	0.88	+0.1
4,287,499	+		Pf6N2E2_3678	0.90	-1.7
4,287,523	+				-0.6
4,287,523	+				+0.1
4,287,523	+				+1.1
4,287,524	-				+1.1
4,287,635	+				-0.5
4,287,635	+				+1.1
4,287,641	+				+0.1
4,287,641	+				+1.1
4,287,641	+				+0.1
4,287,642	-				+1.1
4,287,642	-				+0.1
4,287,923	-		Pf6N2E2_3679	0.26	-0.9
4,288,256	-		Pf6N2E2_3679	0.66	+0.1
4,288,258	+		Pf6N2E2_3679	0.66	+1.1
4,288,258	+		Pf6N2E2_3679	0.66	+0.1
4,288,303	+		Pf6N2E2_3679	0.72	-0.7
4,288,303	+		Pf6N2E2_3679	0.72	-1.0
4,288,304	-		Pf6N2E2_3679	0.72	+0.1
4,288,304	-		Pf6N2E2_3679	0.72	-1.2
4,288,304	-		Pf6N2E2_3679	0.72	-0.5
4,288,364	-		Pf6N2E2_3679	0.79	+1.1
4,288,402	+		Pf6N2E2_3679	0.83	+1.1
4,288,403	-		Pf6N2E2_3679	0.83	-1.7
4,288,498	-				+2.1