Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3571

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
4,161,116	+		Pf6N2E2_3569	0.27	-0.7
4,161,116	+		Pf6N2E2_3569	0.27	-1.2
4,161,545	+				+1.1
4,161,552	+				-0.5
4,161,553	-				-0.5
4,161,584	+				-1.2
4,161,585	-				+0.1
4,161,886	+		Pf6N2E2_3570	0.53	-0.9
4,161,952	+		Pf6N2E2_3570	0.66	+1.1
4,161,952	+		Pf6N2E2_3570	0.66	+1.1
4,161,952	+		Pf6N2E2_3570	0.66	+1.1
4,161,953	-		Pf6N2E2_3570	0.67	-0.7
4,161,953	-		Pf6N2E2_3570	0.67	+1.1
4,161,953	-		Pf6N2E2_3570	0.67	+0.1
4,161,953	-		Pf6N2E2_3570	0.67	-0.5
4,161,953	-		Pf6N2E2_3570	0.67	-0.5
4,162,033	+		Pf6N2E2_3570	0.83	+1.1
4,162,033	+		Pf6N2E2_3570	0.83	+1.1
4,162,081	+				+0.1
4,162,081	+				+1.1
4,162,081	+				-0.5
4,162,082	-				-0.8
4,162,082	-				+0.1
4,162,173	+				-0.5
4,162,179	+				-0.5
4,162,179	+				+1.1
4,162,179	+				+1.1
4,162,179	+				-0.5
4,162,179	+				+1.1
4,162,179	+				-0.5
4,162,180	-				+0.1
4,162,180	-				+0.1
4,162,180	-				+0.1
4,162,180	-				+0.1
4,162,180	-				-1.3
4,162,180	-				+1.1
4,162,180	-				+1.1
4,162,392	+		Pf6N2E2_3571	0.41	+0.1
4,162,540	+		Pf6N2E2_3571	0.63	+0.4
4,162,540	+		Pf6N2E2_3571	0.63	+1.1
4,162,541	-		Pf6N2E2_3571	0.63	+1.1
4,162,541	-		Pf6N2E2_3571	0.63	+1.1
4,162,767	+				+0.1
4,162,767	+				+1.1
4,162,767	+				-0.3
4,162,788	+				+0.1
4,162,789	-				+0.6
4,162,805	+				+1.1
4,162,805	+				-0.8
4,162,805	+				-0.2
4,162,805	+				+1.1
4,162,806	-				+0.1
4,162,806	-				+1.1
4,162,806	-				+1.1
4,162,806	-				+0.1
4,162,840	+				+0.1
4,162,840	+				-1.7
4,162,841	-				-0.3
4,162,885	+		Pf6N2E2_3572	0.14	-0.3
4,162,886	-		Pf6N2E2_3572	0.14	-0.9
4,162,897	-		Pf6N2E2_3572	0.16	+1.1
4,162,897	-				+1.1
4,162,897	-		Pf6N2E2_3572	0.16	-0.8
4,162,926	+		Pf6N2E2_3572	0.20	+1.1
4,162,926	+		Pf6N2E2_3572	0.20	-0.9
4,162,926	+		Pf6N2E2_3572	0.20	-0.6
4,162,926	+		Pf6N2E2_3572	0.20	-0.9
4,162,926	+		Pf6N2E2_3572	0.20	-0.3
4,162,926	+		Pf6N2E2_3572	0.20	+0.1
4,162,927	-		Pf6N2E2_3572	0.21	-0.5
4,162,927	-		Pf6N2E2_3572	0.21	-0.9
4,162,927	-		Pf6N2E2_3572	0.21	+0.4
4,162,927	-		Pf6N2E2_3572	0.21	-0.5
4,162,927	-		Pf6N2E2_3572	0.21	-0.4
4,162,927	-		Pf6N2E2_3572	0.21	+1.1
4,163,163	+		Pf6N2E2_3572	0.59	+0.1
4,163,163	+		Pf6N2E2_3572	0.59	+0.1
4,163,163	+		Pf6N2E2_3572	0.59	+0.1
4,163,163	+		Pf6N2E2_3572	0.59	+1.1
4,163,163	+		Pf6N2E2_3572	0.59	-0.5
4,163,163	+		Pf6N2E2_3572	0.59	+1.1
4,163,163	+		Pf6N2E2_3572	0.59	+1.1
4,163,164	-		Pf6N2E2_3572	0.59	+1.1
4,163,164	-		Pf6N2E2_3572	0.59	+1.1
4,163,164	-		Pf6N2E2_3572	0.59	+1.1
4,163,164	-		Pf6N2E2_3572	0.59	-1.3
4,163,164	-		Pf6N2E2_3572	0.59	+0.1
4,163,164	-		Pf6N2E2_3572	0.59	+0.1
4,163,164	-		Pf6N2E2_3572	0.59	+1.1
4,163,164	-		Pf6N2E2_3572	0.59	+0.7
4,163,164	-		Pf6N2E2_3572	0.59	-0.5
4,163,164	-		Pf6N2E2_3572	0.59	+0.1
4,163,164	-		Pf6N2E2_3572	0.59	-0.5
4,163,164	-		Pf6N2E2_3572	0.59	+1.1
4,163,164	-		Pf6N2E2_3572	0.59	-0.9
4,163,164	-		Pf6N2E2_3572	0.59	-0.7
4,163,164	-		Pf6N2E2_3572	0.59	+1.1
4,163,164	-		Pf6N2E2_3572	0.59	-0.8
4,163,164	-		Pf6N2E2_3572	0.59	+0.1
4,163,164	-		Pf6N2E2_3572	0.59	+1.1
4,163,246	+		Pf6N2E2_3572	0.73	+0.3
4,163,247	-		Pf6N2E2_3572	0.73	-0.6
4,163,333	-		Pf6N2E2_3572	0.87	-0.5
4,163,441	+				-0.5
4,163,658	+		Pf6N2E2_3573	0.37	-0.5
4,163,659	-		Pf6N2E2_3573	0.37	-0.5
4,163,659	-		Pf6N2E2_3573	0.37	-0.5
4,163,659	-		Pf6N2E2_3573	0.37	+1.1