Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_252

Experiment: Ying_Nucleobase14 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_251 and Pf6N2E2_252 overlap by 39 nucleotidesPf6N2E2_252 and Pf6N2E2_253 are separated by 360 nucleotides Pf6N2E2_251 - transcriptional regulator, at 312,680 to 314,167 _251 Pf6N2E2_252 - Disease resistance protein / Tetratricopeptide repeat-containing protein, at 314,129 to 316,918 _252 Pf6N2E2_253 - Non-heme chloroperoxidase (EC 1.11.1.10), at 317,279 to 318,100 _253 Position (kb) 314 315 316 317Strain fitness (log2 ratio) -2 -1 0 1at 313.734 kb on + strand, within Pf6N2E2_251at 313.735 kb on - strand, within Pf6N2E2_251at 313.735 kb on - strand, within Pf6N2E2_251at 313.929 kb on + strand, within Pf6N2E2_251at 314.027 kb on + strandat 314.027 kb on + strandat 314.028 kb on - strandat 314.028 kb on - strandat 314.028 kb on - strandat 314.028 kb on - strandat 314.082 kb on - strandat 314.655 kb on + strand, within Pf6N2E2_252at 314.691 kb on + strand, within Pf6N2E2_252at 314.827 kb on - strand, within Pf6N2E2_252at 314.827 kb on - strand, within Pf6N2E2_252at 315.036 kb on + strand, within Pf6N2E2_252at 315.056 kb on + strand, within Pf6N2E2_252at 315.056 kb on + strand, within Pf6N2E2_252at 315.174 kb on + strand, within Pf6N2E2_252at 315.175 kb on - strand, within Pf6N2E2_252at 315.267 kb on + strand, within Pf6N2E2_252at 315.267 kb on + strand, within Pf6N2E2_252at 315.267 kb on + strand, within Pf6N2E2_252at 315.267 kb on + strand, within Pf6N2E2_252at 315.268 kb on - strand, within Pf6N2E2_252at 315.400 kb on - strand, within Pf6N2E2_252at 315.544 kb on - strand, within Pf6N2E2_252at 315.596 kb on + strand, within Pf6N2E2_252at 315.597 kb on - strand, within Pf6N2E2_252at 315.597 kb on - strand, within Pf6N2E2_252at 315.597 kb on - strand, within Pf6N2E2_252at 316.447 kb on + strand, within Pf6N2E2_252at 316.635 kb on + strand, within Pf6N2E2_252at 316.635 kb on + strand, within Pf6N2E2_252at 316.635 kb on + strand, within Pf6N2E2_252at 316.635 kb on + strand, within Pf6N2E2_252at 316.702 kb on + strandat 316.909 kb on - strandat 316.909 kb on - strandat 316.909 kb on - strandat 316.964 kb on + strandat 316.964 kb on + strandat 317.013 kb on + strandat 317.013 kb on + strandat 317.014 kb on - strandat 317.122 kb on + strandat 317.123 kb on - strandat 317.214 kb on - strandat 317.247 kb on - strandat 317.294 kb on - strandat 317.315 kb on + strandat 317.315 kb on + strandat 317.315 kb on + strandat 317.316 kb on - strandat 317.316 kb on - strandat 317.316 kb on - strandat 317.316 kb on - strandat 317.318 kb on + strandat 317.318 kb on + strandat 317.319 kb on - strandat 317.742 kb on + strand, within Pf6N2E2_253at 317.743 kb on - strand, within Pf6N2E2_253at 317.744 kb on + strand, within Pf6N2E2_253at 317.744 kb on + strand, within Pf6N2E2_253at 317.744 kb on + strand, within Pf6N2E2_253at 317.744 kb on + strand, within Pf6N2E2_253at 317.745 kb on - strand, within Pf6N2E2_253at 317.745 kb on - strand, within Pf6N2E2_253at 317.745 kb on - strand, within Pf6N2E2_253at 317.745 kb on - strand, within Pf6N2E2_253at 317.745 kb on - strand, within Pf6N2E2_253at 317.858 kb on + strand, within Pf6N2E2_253at 317.858 kb on + strand, within Pf6N2E2_253at 317.858 kb on + strand, within Pf6N2E2_253at 317.858 kb on + strand, within Pf6N2E2_253at 317.858 kb on + strand, within Pf6N2E2_253at 317.858 kb on + strand, within Pf6N2E2_253at 317.858 kb on + strand, within Pf6N2E2_253at 317.858 kb on + strand, within Pf6N2E2_253at 317.858 kb on + strand, within Pf6N2E2_253at 317.858 kb on + strand, within Pf6N2E2_253at 317.859 kb on - strand, within Pf6N2E2_253at 317.859 kb on - strand, within Pf6N2E2_253at 317.859 kb on - strand, within Pf6N2E2_253at 317.859 kb on - strand, within Pf6N2E2_253at 317.859 kb on - strand, within Pf6N2E2_253at 317.859 kb on - strand, within Pf6N2E2_253at 317.859 kb on - strand, within Pf6N2E2_253at 317.859 kb on - strand, within Pf6N2E2_253

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 2
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313,734 + Pf6N2E2_251 0.71 -0.0
313,735 - Pf6N2E2_251 0.71 +1.0
313,735 - Pf6N2E2_251 0.71 +0.2
313,929 + Pf6N2E2_251 0.84 -0.0
314,027 + -0.6
314,027 + -0.0
314,028 - -0.0
314,028 - -0.6
314,028 - -0.8
314,028 - +1.0
314,082 - -1.0
314,655 + Pf6N2E2_252 0.19 +1.0
314,691 + Pf6N2E2_252 0.20 -0.0
314,827 - Pf6N2E2_252 0.25 +1.0
314,827 - Pf6N2E2_252 0.25 +1.0
315,036 + Pf6N2E2_252 0.33 +1.0
315,056 + Pf6N2E2_252 0.33 -0.6
315,056 + Pf6N2E2_252 0.33 -0.0
315,174 + Pf6N2E2_252 0.37 +1.0
315,175 - Pf6N2E2_252 0.37 +1.0
315,267 + Pf6N2E2_252 0.41 -0.0
315,267 + Pf6N2E2_252 0.41 +1.0
315,267 + Pf6N2E2_252 0.41 -0.4
315,267 + Pf6N2E2_252 0.41 +1.0
315,268 - Pf6N2E2_252 0.41 -0.0
315,400 - Pf6N2E2_252 0.46 -0.6
315,544 - Pf6N2E2_252 0.51 -1.0
315,596 + Pf6N2E2_252 0.53 -0.6
315,597 - Pf6N2E2_252 0.53 -0.6
315,597 - Pf6N2E2_252 0.53 +1.0
315,597 - Pf6N2E2_252 0.53 -0.0
316,447 + Pf6N2E2_252 0.83 -2.0
316,635 + Pf6N2E2_252 0.90 -0.9
316,635 + Pf6N2E2_252 0.90 +1.0
316,635 + Pf6N2E2_252 0.90 +1.0
316,635 + Pf6N2E2_252 0.90 -2.2
316,702 + +1.0
316,909 - +0.1
316,909 - +1.0
316,909 - +1.0
316,964 + +1.0
316,964 + +1.0
317,013 + +1.0
317,013 + +1.0
317,014 - +1.0
317,122 + +1.0
317,123 - -0.9
317,214 - -0.9
317,247 - -0.0
317,294 - -0.4
317,315 + +1.0
317,315 + -0.9
317,315 + -0.6
317,316 - -0.0
317,316 - +1.0
317,316 - -1.2
317,316 - +1.0
317,318 + +0.1
317,318 + +1.2
317,319 - +1.0
317,742 + Pf6N2E2_253 0.56 +1.0
317,743 - Pf6N2E2_253 0.56 -0.3
317,744 + Pf6N2E2_253 0.57 +1.0
317,744 + Pf6N2E2_253 0.57 -0.2
317,744 + Pf6N2E2_253 0.57 -1.1
317,744 + Pf6N2E2_253 0.57 +1.0
317,745 - Pf6N2E2_253 0.57 +1.0
317,745 - Pf6N2E2_253 0.57 -0.6
317,745 - Pf6N2E2_253 0.57 -0.6
317,745 - Pf6N2E2_253 0.57 +1.0
317,745 - Pf6N2E2_253 0.57 -0.0
317,858 + Pf6N2E2_253 0.70 +1.0
317,858 + Pf6N2E2_253 0.70 +1.0
317,858 + Pf6N2E2_253 0.70 +1.0
317,858 + Pf6N2E2_253 0.70 +1.0
317,858 + Pf6N2E2_253 0.70 +1.0
317,858 + Pf6N2E2_253 0.70 -0.6
317,858 + Pf6N2E2_253 0.70 +1.0
317,858 + Pf6N2E2_253 0.70 +1.0
317,858 + Pf6N2E2_253 0.70 +1.0
317,858 + Pf6N2E2_253 0.70 -0.0
317,859 - Pf6N2E2_253 0.71 -0.0
317,859 - Pf6N2E2_253 0.71 +1.0
317,859 - Pf6N2E2_253 0.71 +1.0
317,859 - Pf6N2E2_253 0.71 -1.2
317,859 - Pf6N2E2_253 0.71 +1.0
317,859 - Pf6N2E2_253 0.71 -0.6
317,859 - Pf6N2E2_253 0.71 -0.2
317,859 - Pf6N2E2_253 0.71 -0.0

Or see this region's nucleotide sequence