Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1804

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
2,132,502	+				-1.4
2,133,114	+		Pf6N2E2_1803	0.63	-0.1
2,133,115	-		Pf6N2E2_1803	0.63	+0.9
2,133,172	-		Pf6N2E2_1803	0.69	-0.1
2,133,234	+		Pf6N2E2_1803	0.76	+0.9
2,133,235	-		Pf6N2E2_1803	0.76	-0.4
2,133,440	-				+0.9
2,133,541	+				+0.9
2,134,345	-		Pf6N2E2_1804	0.65	+0.9
2,134,424	+		Pf6N2E2_1804	0.71	+0.9
2,134,425	-		Pf6N2E2_1804	0.71	-0.1
2,134,620	+		Pf6N2E2_1804	0.85	+0.9
2,134,620	+		Pf6N2E2_1804	0.85	-0.1
2,134,620	+		Pf6N2E2_1804	0.85	-3.4
2,134,620	+		Pf6N2E2_1804	0.85	-2.1
2,134,621	-		Pf6N2E2_1804	0.85	-0.7
2,134,621	-		Pf6N2E2_1804	0.85	-1.6
2,134,723	-				+0.9
2,134,742	-				+0.9
2,134,742	-				-0.6
2,134,742	-				+0.9
2,134,842	+				+0.9
2,134,842	+				-0.8
2,134,843	-				-0.1
2,134,845	-				-0.1
2,134,956	-				+0.9
2,135,032	-		Pf6N2E2_1805	0.13	-0.1
2,135,032	-		Pf6N2E2_1805	0.13	+0.9
2,135,040	+		Pf6N2E2_1805	0.14	-0.1
2,135,535	+		Pf6N2E2_1805	0.57	-1.0