Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1789

Experiment: Ying_Nucleobase14 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 2
2,114,985	+				+0.9
2,114,985	+				+0.9
2,115,073	-				+0.9
2,115,234	+		Pf6N2E2_1788	0.25	+0.9
2,115,276	+		Pf6N2E2_1788	0.30	-0.1
2,115,277	-		Pf6N2E2_1788	0.30	+0.9
2,115,374	+		Pf6N2E2_1788	0.40	+0.9
2,115,374	+		Pf6N2E2_1788	0.40	+0.9
2,115,375	-		Pf6N2E2_1788	0.40	+0.9
2,115,375	-		Pf6N2E2_1788	0.40	-0.1
2,115,375	-		Pf6N2E2_1788	0.40	-0.7
2,115,375	-		Pf6N2E2_1788	0.40	-2.9
2,115,398	-		Pf6N2E2_1788	0.42	-0.1
2,115,514	+		Pf6N2E2_1788	0.55	+0.3
2,115,515	-		Pf6N2E2_1788	0.55	+0.3
2,115,517	+		Pf6N2E2_1788	0.55	+0.9
2,115,517	+		Pf6N2E2_1788	0.55	+0.9
2,115,518	-		Pf6N2E2_1788	0.55	-0.1
2,115,869	+				-0.6
2,115,870	-				-0.1
2,115,870	-				+0.9
2,115,929	+				+0.9
2,115,929	+				+0.9
2,115,929	+				+0.9
2,115,978	-				+0.9
2,116,003	+				+0.9
2,116,003	+				-0.1
2,116,147	-				+0.9
2,116,260	-		Pf6N2E2_1789	0.15	-0.7
2,116,260	-		Pf6N2E2_1789	0.15	-0.1
2,116,260	-		Pf6N2E2_1789	0.15	+0.9
2,116,327	+		Pf6N2E2_1789	0.19	-0.7
2,116,328	-		Pf6N2E2_1789	0.19	+0.3
2,116,431	+		Pf6N2E2_1789	0.25	+0.9
2,116,507	-		Pf6N2E2_1789	0.29	-0.1
2,116,507	-		Pf6N2E2_1789	0.29	+0.9
2,116,507	-		Pf6N2E2_1789	0.29	-1.3
2,116,745	+		Pf6N2E2_1789	0.42	+0.9
2,116,745	+		Pf6N2E2_1789	0.42	+0.9
2,116,746	-		Pf6N2E2_1789	0.42	-0.9
2,116,832	+		Pf6N2E2_1789	0.46	+0.9
2,116,832	+		Pf6N2E2_1789	0.46	+0.9
2,116,832	+		Pf6N2E2_1789	0.46	-1.0
2,116,832	+		Pf6N2E2_1789	0.46	-0.3
2,116,832	+		Pf6N2E2_1789	0.46	+0.9
2,116,832	+		Pf6N2E2_1789	0.46	+0.9
2,116,832	+		Pf6N2E2_1789	0.46	+0.9
2,116,832	+		Pf6N2E2_1789	0.46	+0.9
2,116,832	+		Pf6N2E2_1789	0.46	+0.9
2,116,833	-		Pf6N2E2_1789	0.47	+0.9
2,116,860	+		Pf6N2E2_1789	0.48	+0.9
2,116,860	+		Pf6N2E2_1789	0.48	+0.9
2,116,860	+		Pf6N2E2_1789	0.48	+0.9
2,116,860	+		Pf6N2E2_1789	0.48	-0.1
2,116,860	+		Pf6N2E2_1789	0.48	-0.1
2,116,886	+		Pf6N2E2_1789	0.49	+0.9
2,116,886	+		Pf6N2E2_1789	0.49	-1.7
2,117,009	-		Pf6N2E2_1789	0.56	+0.9
2,117,070	-		Pf6N2E2_1789	0.59	-0.0
2,117,150	+		Pf6N2E2_1789	0.64	+0.9
2,117,150	+		Pf6N2E2_1789	0.64	+0.9
2,117,151	-		Pf6N2E2_1789	0.64	+0.9
2,117,151	-		Pf6N2E2_1789	0.64	+0.8
2,117,151	-		Pf6N2E2_1789	0.64	-0.1
2,117,289	-		Pf6N2E2_1789	0.71	-0.1
2,117,289	-		Pf6N2E2_1789	0.71	+0.9
2,117,536	+		Pf6N2E2_1789	0.85	-0.1
2,117,649	-				-0.1
2,117,649	-				+0.9
2,117,649	-				+0.2
2,117,704	+				+0.9
2,117,704	+				+0.9
2,117,883	-				-0.7
2,117,910	+				+0.9
2,117,911	-				-0.1
2,117,911	-				-0.1
2,118,004	+				+0.9
2,118,011	+				+0.9
2,118,012	-				+0.9
2,118,035	+				-0.1
2,118,098	+				+0.9
2,118,120	-				+0.3
2,118,228	+				-0.1
2,118,246	-				-0.7
2,118,495	+		Pf6N2E2_1790	0.16	-0.7
2,118,495	+		Pf6N2E2_1790	0.16	+0.9
2,118,593	+		Pf6N2E2_1790	0.21	-0.7
2,118,593	+		Pf6N2E2_1790	0.21	+0.9
2,118,654	+		Pf6N2E2_1790	0.24	-0.7
2,118,655	-		Pf6N2E2_1790	0.24	+0.9
2,118,655	-		Pf6N2E2_1790	0.24	+0.9
2,118,788	+		Pf6N2E2_1790	0.31	-0.7
2,118,788	+		Pf6N2E2_1790	0.31	-0.1
2,118,789	-		Pf6N2E2_1790	0.31	+1.2
2,118,789	-		Pf6N2E2_1790	0.31	-1.4
2,118,789	-		Pf6N2E2_1790	0.31	+0.9
2,118,789	-		Pf6N2E2_1790	0.31	+0.9
2,118,789	-		Pf6N2E2_1790	0.31	+0.9
2,118,791	+		Pf6N2E2_1790	0.31	+0.9
2,118,791	+		Pf6N2E2_1790	0.31	+0.9
2,118,791	+		Pf6N2E2_1790	0.31	+0.1
2,118,791	+		Pf6N2E2_1790	0.31	-2.7
2,118,792	-		Pf6N2E2_1790	0.31	+0.9
2,118,792	-		Pf6N2E2_1790	0.31	-1.0