Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_848

Experiment: Ying_OrganicAcid7 rep C; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_846 and Pf6N2E2_847 are separated by 52 nucleotidesPf6N2E2_847 and Pf6N2E2_848 overlap by 8 nucleotidesPf6N2E2_848 and Pf6N2E2_849 overlap by 19 nucleotides Pf6N2E2_846 - Universal stress protein family 5, at 991,394 to 992,284 _846 Pf6N2E2_847 - Phosphoribosyl transferase domain protein, at 992,337 to 993,041 _847 Pf6N2E2_848 - hypothetical protein, at 993,034 to 993,729 _848 Pf6N2E2_849 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 993,711 to 995,078 _849 Position (kb) 993 994Strain fitness (log2 ratio) -1 0 1at 992.173 kb on + strand, within Pf6N2E2_846at 992.173 kb on + strand, within Pf6N2E2_846at 992.173 kb on + strand, within Pf6N2E2_846at 992.173 kb on + strand, within Pf6N2E2_846at 992.174 kb on - strand, within Pf6N2E2_846at 992.174 kb on - strand, within Pf6N2E2_846at 992.174 kb on - strand, within Pf6N2E2_846at 992.231 kb on - strandat 992.245 kb on + strandat 992.245 kb on + strandat 992.246 kb on - strandat 992.259 kb on + strandat 992.259 kb on + strandat 992.282 kb on + strandat 992.282 kb on + strandat 992.282 kb on + strandat 992.282 kb on + strandat 992.587 kb on + strand, within Pf6N2E2_847at 992.588 kb on - strand, within Pf6N2E2_847at 992.798 kb on - strand, within Pf6N2E2_847at 992.934 kb on + strand, within Pf6N2E2_847at 992.934 kb on + strand, within Pf6N2E2_847at 992.935 kb on - strand, within Pf6N2E2_847at 993.172 kb on + strand, within Pf6N2E2_848at 993.172 kb on + strand, within Pf6N2E2_848at 993.173 kb on - strand, within Pf6N2E2_848at 993.173 kb on - strand, within Pf6N2E2_848at 993.670 kb on + strandat 993.671 kb on - strandat 993.671 kb on - strandat 993.671 kb on - strandat 993.705 kb on - strandat 993.705 kb on - strandat 993.705 kb on - strandat 993.727 kb on + strandat 993.728 kb on - strandat 993.874 kb on + strand, within Pf6N2E2_849at 993.874 kb on + strand, within Pf6N2E2_849at 994.115 kb on - strand, within Pf6N2E2_849at 994.318 kb on + strand, within Pf6N2E2_849at 994.319 kb on - strand, within Pf6N2E2_849at 994.321 kb on + strand, within Pf6N2E2_849at 994.322 kb on - strand, within Pf6N2E2_849at 994.322 kb on - strand, within Pf6N2E2_849at 994.322 kb on - strand, within Pf6N2E2_849at 994.322 kb on - strand, within Pf6N2E2_849at 994.483 kb on + strand, within Pf6N2E2_849at 994.484 kb on - strand, within Pf6N2E2_849at 994.484 kb on - strand, within Pf6N2E2_849at 994.484 kb on - strand, within Pf6N2E2_849at 994.484 kb on - strand, within Pf6N2E2_849at 994.523 kb on - strand, within Pf6N2E2_849at 994.570 kb on + strand, within Pf6N2E2_849at 994.570 kb on + strand, within Pf6N2E2_849at 994.607 kb on - strand, within Pf6N2E2_849

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2
remove
992,173 + Pf6N2E2_846 0.87 +0.8
992,173 + Pf6N2E2_846 0.87 +0.8
992,173 + Pf6N2E2_846 0.87 -0.7
992,173 + Pf6N2E2_846 0.87 -0.2
992,174 - Pf6N2E2_846 0.88 +0.8
992,174 - Pf6N2E2_846 0.88 +0.8
992,174 - Pf6N2E2_846 0.88 -0.7
992,231 - +0.8
992,245 + +0.8
992,245 + +0.5
992,246 - +0.8
992,259 + -0.2
992,259 + +0.8
992,282 + -1.5
992,282 + +0.8
992,282 + -0.5
992,282 + -0.3
992,587 + Pf6N2E2_847 0.35 +0.3
992,588 - Pf6N2E2_847 0.36 -1.5
992,798 - Pf6N2E2_847 0.65 -0.2
992,934 + Pf6N2E2_847 0.85 +0.8
992,934 + Pf6N2E2_847 0.85 -0.2
992,935 - Pf6N2E2_847 0.85 +0.8
993,172 + Pf6N2E2_848 0.20 -1.2
993,172 + Pf6N2E2_848 0.20 -1.3
993,173 - Pf6N2E2_848 0.20 -0.7
993,173 - Pf6N2E2_848 0.20 +0.8
993,670 + +0.8
993,671 - +0.8
993,671 - +0.1
993,671 - -0.5
993,705 - +0.8
993,705 - +0.8
993,705 - -0.2
993,727 + +0.3
993,728 - -0.2
993,874 + Pf6N2E2_849 0.12 -0.3
993,874 + Pf6N2E2_849 0.12 +0.8
994,115 - Pf6N2E2_849 0.30 -0.6
994,318 + Pf6N2E2_849 0.44 +0.8
994,319 - Pf6N2E2_849 0.44 +0.8
994,321 + Pf6N2E2_849 0.45 +0.8
994,322 - Pf6N2E2_849 0.45 -0.2
994,322 - Pf6N2E2_849 0.45 -0.2
994,322 - Pf6N2E2_849 0.45 -0.3
994,322 - Pf6N2E2_849 0.45 -0.2
994,483 + Pf6N2E2_849 0.56 +0.8
994,484 - Pf6N2E2_849 0.57 -0.2
994,484 - Pf6N2E2_849 0.57 -1.2
994,484 - Pf6N2E2_849 0.57 +0.8
994,484 - Pf6N2E2_849 0.57 +0.8
994,523 - Pf6N2E2_849 0.59 +0.8
994,570 + Pf6N2E2_849 0.63 -0.4
994,570 + Pf6N2E2_849 0.63 +0.8
994,607 - Pf6N2E2_849 0.65 -0.8

Or see this region's nucleotide sequence