Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5548

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
6,362,034	+		Pf6N2E2_5547	0.37	-1.3
6,362,034	+		Pf6N2E2_5547	0.37	+0.0
6,362,035	-		Pf6N2E2_5547	0.37	+1.0
6,362,035	-		Pf6N2E2_5547	0.37	+1.0
6,362,035	-		Pf6N2E2_5547	0.37	+1.0
6,362,089	+		Pf6N2E2_5547	0.41	+1.0
6,362,089	+		Pf6N2E2_5547	0.41	+0.0
6,362,090	-		Pf6N2E2_5547	0.41	+0.0
6,362,090	-		Pf6N2E2_5547	0.41	+0.0
6,362,122	+		Pf6N2E2_5547	0.43	-0.3
6,362,122	+		Pf6N2E2_5547	0.43	+1.0
6,362,122	+		Pf6N2E2_5547	0.43	+1.0
6,362,122	+		Pf6N2E2_5547	0.43	+0.0
6,362,122	+		Pf6N2E2_5547	0.43	+1.0
6,362,122	+		Pf6N2E2_5547	0.43	+1.0
6,362,123	-		Pf6N2E2_5547	0.43	-1.0
6,362,123	-		Pf6N2E2_5547	0.43	+0.0
6,362,123	-		Pf6N2E2_5547	0.43	+0.0
6,362,123	-		Pf6N2E2_5547	0.43	+0.0
6,362,123	-		Pf6N2E2_5547	0.43	+0.0
6,362,123	-		Pf6N2E2_5547	0.43	+1.0
6,362,123	-		Pf6N2E2_5547	0.43	-0.7
6,362,123	-		Pf6N2E2_5547	0.43	+0.0
6,362,130	+		Pf6N2E2_5547	0.44	-0.6
6,362,130	+		Pf6N2E2_5547	0.44	-1.0
6,362,130	+		Pf6N2E2_5547	0.44	+1.0
6,362,130	+		Pf6N2E2_5547	0.44	+1.0
6,362,131	-		Pf6N2E2_5547	0.44	-1.8
6,362,131	-		Pf6N2E2_5547	0.44	+1.0
6,362,131	-		Pf6N2E2_5547	0.44	-1.0
6,362,175	+		Pf6N2E2_5547	0.47	+1.0
6,362,257	-		Pf6N2E2_5547	0.53	+1.0
6,362,348	+		Pf6N2E2_5547	0.59	+0.3
6,362,349	-		Pf6N2E2_5547	0.59	+1.4
6,362,374	-		Pf6N2E2_5547	0.61	+1.0
6,362,374	-		Pf6N2E2_5547	0.61	-1.3
6,362,374	-		Pf6N2E2_5547	0.61	+0.0
6,362,374	-		Pf6N2E2_5547	0.61	+1.0
6,362,473	+		Pf6N2E2_5547	0.68	+1.0
6,362,474	-		Pf6N2E2_5547	0.68	-0.6
6,362,474	-		Pf6N2E2_5547	0.68	+1.0
6,362,474	-		Pf6N2E2_5547	0.68	+1.0
6,362,474	-		Pf6N2E2_5547	0.68	+0.0
6,362,474	-		Pf6N2E2_5547	0.68	-0.3
6,362,474	-		Pf6N2E2_5547	0.68	+1.0
6,362,474	-		Pf6N2E2_5547	0.68	-0.4
6,362,474	-		Pf6N2E2_5547	0.68	+0.0
6,362,520	+		Pf6N2E2_5547	0.71	-0.1
6,362,695	+		Pf6N2E2_5547	0.83	+1.0
6,362,696	-		Pf6N2E2_5547	0.83	-1.6
6,362,796	-				+1.0
6,362,797	+				+1.0
6,362,797	+				+1.0
6,362,798	-				-0.8
6,362,798	-				+2.0
6,362,798	-				+1.0
6,362,798	-				+1.0
6,362,803	+				+1.0
6,362,803	+				+1.0
6,362,803	+				-0.9
6,362,803	+				-2.0
6,362,803	+				+1.0
6,362,804	-				+0.0
6,362,804	-				+1.0
6,362,804	-				+1.0
6,362,804	-				+1.0
6,362,841	+				-1.0
6,362,867	-				+1.0
6,362,938	+				+1.0
6,362,938	+				+1.0
6,362,939	-				+1.0
6,362,939	-				+1.0
6,362,947	+				-1.3
6,362,970	+				+1.0
6,362,972	+				+1.0
6,362,973	-				-0.6
6,362,973	-				+1.0
6,362,973	-				-0.6
6,362,976	-				-0.4
6,362,995	+				+1.0
6,362,995	+				+1.0
6,362,996	-				+0.0
6,363,009	-				+1.0
6,363,009	-				+2.0
6,363,009	-				+1.0
6,363,009	-				+1.0
6,363,073	+				+1.0
6,363,074	-				+1.0
6,363,074	-				+1.0
6,363,074	-				+1.0
6,363,278	-		Pf6N2E2_5548	0.21	+0.0
6,363,278	-		Pf6N2E2_5548	0.21	+0.0
6,363,512	+		Pf6N2E2_5548	0.40	+1.0
6,363,512	+		Pf6N2E2_5548	0.40	-0.1
6,363,512	+		Pf6N2E2_5548	0.40	+1.0
6,363,512	+		Pf6N2E2_5548	0.40	+1.0
6,363,513	-		Pf6N2E2_5548	0.41	+0.0
6,363,513	-		Pf6N2E2_5548	0.41	+0.0
6,363,513	-		Pf6N2E2_5548	0.41	+1.0
6,363,545	+		Pf6N2E2_5548	0.43	+0.0
6,363,546	-		Pf6N2E2_5548	0.43	+1.0
6,363,546	-		Pf6N2E2_5548	0.43	+1.0
6,363,797	+		Pf6N2E2_5548	0.64	+1.0
6,363,797	+		Pf6N2E2_5548	0.64	-0.1
6,363,797	+		Pf6N2E2_5548	0.64	+1.0
6,363,797	+		Pf6N2E2_5548	0.64	+0.2
6,363,797	+		Pf6N2E2_5548	0.64	-1.3
6,363,797	+		Pf6N2E2_5548	0.64	+1.0
6,363,797	+		Pf6N2E2_5548	0.64	-0.6
6,363,798	-		Pf6N2E2_5548	0.65	+1.0
6,363,798	-		Pf6N2E2_5548	0.65	+0.3
6,363,798	-		Pf6N2E2_5548	0.65	-1.0
6,363,798	-		Pf6N2E2_5548	0.65	+1.0
6,363,929	+		Pf6N2E2_5548	0.76	-0.7
6,363,929	+		Pf6N2E2_5548	0.76	-0.6
6,363,930	-		Pf6N2E2_5548	0.76	+1.0
6,363,930	-		Pf6N2E2_5548	0.76	-1.7
6,364,250	-				+0.0
6,364,250	-				+0.0
6,364,250	-				-0.6
6,364,457	+				+1.0
6,364,457	+				+1.0
6,364,457	+				+1.0
6,364,457	+				+1.0
6,364,458	-				+2.0
6,364,458	-				+1.0
6,364,458	-				-0.5
6,364,458	-				+1.0
6,364,458	-				+1.0
6,364,476	-				-0.6
6,364,476	-				+0.0
6,364,691	-		Pf6N2E2_5549	0.24	-0.6
6,364,691	-		Pf6N2E2_5549	0.24	+2.6
6,364,700	+		Pf6N2E2_5549	0.25	+0.0
6,364,700	+		Pf6N2E2_5549	0.25	-0.6
6,364,700	+		Pf6N2E2_5549	0.25	+1.0
6,364,700	+		Pf6N2E2_5549	0.25	+1.0
6,364,701	-		Pf6N2E2_5549	0.25	+1.0
6,364,701	-		Pf6N2E2_5549	0.25	-1.0
6,364,701	-		Pf6N2E2_5549	0.25	-0.6
6,364,701	-		Pf6N2E2_5549	0.25	+0.0
6,364,701	-		Pf6N2E2_5549	0.25	+0.0
6,364,741	-		Pf6N2E2_5549	0.29	+1.0
6,364,748	+		Pf6N2E2_5549	0.30	+1.0
6,364,748	+		Pf6N2E2_5549	0.30	+1.0
6,364,749	-		Pf6N2E2_5549	0.30	-0.3
6,365,023	+		Pf6N2E2_5549	0.60	+0.2