Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_499 and Pf6N2E2_500 are separated by 78 nucleotides Pf6N2E2_500 and Pf6N2E2_501 are separated by 84 nucleotides
Pf6N2E2_499 - Possible pyrimidine permease in reductive pathway, at 567,621 to 569,099
_499
Pf6N2E2_500 - Beta-ureidopropionase (EC 3.5.1.6), at 569,178 to 570,461
_500
Pf6N2E2_501 - Sensory box transcriptional regulator, LuxR family, at 570,546 to 572,030
_501
Position (kb) 569
570
571 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 568.317 kb on + strand, within Pf6N2E2_499 at 568.317 kb on + strand, within Pf6N2E2_499 at 568.318 kb on - strand, within Pf6N2E2_499 at 568.318 kb on - strand, within Pf6N2E2_499 at 568.318 kb on - strand, within Pf6N2E2_499 at 568.783 kb on - strand, within Pf6N2E2_499 at 568.848 kb on + strand, within Pf6N2E2_499 at 568.849 kb on - strand, within Pf6N2E2_499 at 568.905 kb on + strand, within Pf6N2E2_499 at 568.998 kb on + strand at 568.998 kb on + strand at 568.999 kb on - strand at 569.043 kb on + strand at 569.200 kb on + strand at 569.200 kb on + strand at 569.201 kb on - strand at 569.760 kb on + strand, within Pf6N2E2_500 at 569.761 kb on - strand, within Pf6N2E2_500 at 569.909 kb on + strand, within Pf6N2E2_500 at 569.910 kb on - strand, within Pf6N2E2_500 at 570.190 kb on - strand, within Pf6N2E2_500 at 570.476 kb on - strand at 570.497 kb on - strand at 570.526 kb on - strand at 570.526 kb on - strand at 570.526 kb on - strand at 570.526 kb on - strand at 570.726 kb on + strand, within Pf6N2E2_501 at 570.726 kb on + strand, within Pf6N2E2_501 at 570.726 kb on + strand, within Pf6N2E2_501 at 570.727 kb on - strand, within Pf6N2E2_501 at 570.727 kb on - strand, within Pf6N2E2_501 at 570.783 kb on + strand, within Pf6N2E2_501 at 570.784 kb on - strand, within Pf6N2E2_501 at 570.784 kb on - strand, within Pf6N2E2_501 at 571.038 kb on + strand, within Pf6N2E2_501 at 571.038 kb on + strand, within Pf6N2E2_501 at 571.039 kb on - strand, within Pf6N2E2_501 at 571.111 kb on - strand, within Pf6N2E2_501
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 568,317 + Pf6N2E2_499 0.47 -0.1 568,317 + Pf6N2E2_499 0.47 +0.9 568,318 - Pf6N2E2_499 0.47 -0.7 568,318 - Pf6N2E2_499 0.47 +1.5 568,318 - Pf6N2E2_499 0.47 +0.9 568,783 - Pf6N2E2_499 0.79 -0.1 568,848 + Pf6N2E2_499 0.83 -0.7 568,849 - Pf6N2E2_499 0.83 -0.1 568,905 + Pf6N2E2_499 0.87 +0.9 568,998 + +0.9 568,998 + +0.9 568,999 - -0.1 569,043 + +0.5 569,200 + -1.1 569,200 + -0.7 569,201 - -0.8 569,760 + Pf6N2E2_500 0.45 -0.1 569,761 - Pf6N2E2_500 0.45 -0.1 569,909 + Pf6N2E2_500 0.57 -3.6 569,910 - Pf6N2E2_500 0.57 -0.1 570,190 - Pf6N2E2_500 0.79 +0.9 570,476 - +1.3 570,497 - -1.1 570,526 - +0.9 570,526 - +0.9 570,526 - -0.5 570,526 - +0.9 570,726 + Pf6N2E2_501 0.12 +0.9 570,726 + Pf6N2E2_501 0.12 -0.1 570,726 + Pf6N2E2_501 0.12 +0.9 570,727 - Pf6N2E2_501 0.12 -0.1 570,727 - Pf6N2E2_501 0.12 -0.1 570,783 + Pf6N2E2_501 0.16 -0.4 570,784 - Pf6N2E2_501 0.16 -0.0 570,784 - Pf6N2E2_501 0.16 -0.1 571,038 + Pf6N2E2_501 0.33 +0.9 571,038 + Pf6N2E2_501 0.33 -0.1 571,039 - Pf6N2E2_501 0.33 +0.9 571,111 - Pf6N2E2_501 0.38 -0.1
Or see this region's nucleotide sequence