Experiment: Ying_OrganicAcid7 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3629 and Pf6N2E2_3630 are separated by 170 nucleotides Pf6N2E2_3630 and Pf6N2E2_3631 are separated by 133 nucleotides
Pf6N2E2_3629 - DnaK-related protein, at 4,225,114 to 4,226,874
_3629
Pf6N2E2_3630 - Phosphoserine phosphatase (EC 3.1.3.3), at 4,227,045 to 4,228,259
_3630
Pf6N2E2_3631 - HAMP domain protein, at 4,228,393 to 4,229,907
_3631
Position (kb) 4227
4228
4229 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 4226.138 kb on - strand, within Pf6N2E2_3629 at 4226.138 kb on - strand, within Pf6N2E2_3629 at 4226.140 kb on + strand, within Pf6N2E2_3629 at 4226.140 kb on + strand, within Pf6N2E2_3629 at 4226.141 kb on - strand, within Pf6N2E2_3629 at 4226.141 kb on - strand, within Pf6N2E2_3629 at 4226.141 kb on - strand, within Pf6N2E2_3629 at 4226.141 kb on - strand, within Pf6N2E2_3629 at 4226.172 kb on - strand, within Pf6N2E2_3629 at 4226.178 kb on + strand, within Pf6N2E2_3629 at 4226.287 kb on + strand, within Pf6N2E2_3629 at 4226.288 kb on - strand, within Pf6N2E2_3629 at 4226.365 kb on + strand, within Pf6N2E2_3629 at 4226.365 kb on + strand, within Pf6N2E2_3629 at 4226.365 kb on + strand, within Pf6N2E2_3629 at 4226.365 kb on + strand, within Pf6N2E2_3629 at 4226.365 kb on + strand, within Pf6N2E2_3629 at 4226.365 kb on + strand at 4226.366 kb on - strand, within Pf6N2E2_3629 at 4226.618 kb on - strand, within Pf6N2E2_3629 at 4226.618 kb on - strand, within Pf6N2E2_3629 at 4226.621 kb on + strand, within Pf6N2E2_3629 at 4227.019 kb on + strand at 4227.020 kb on - strand at 4227.082 kb on + strand at 4227.082 kb on + strand at 4227.082 kb on + strand at 4227.082 kb on + strand at 4227.083 kb on - strand at 4227.083 kb on - strand at 4227.083 kb on - strand at 4227.083 kb on - strand at 4227.083 kb on - strand at 4227.083 kb on - strand at 4227.355 kb on + strand, within Pf6N2E2_3630 at 4227.356 kb on - strand, within Pf6N2E2_3630 at 4227.356 kb on - strand, within Pf6N2E2_3630 at 4227.356 kb on - strand, within Pf6N2E2_3630 at 4227.394 kb on + strand, within Pf6N2E2_3630 at 4227.427 kb on + strand, within Pf6N2E2_3630 at 4227.428 kb on - strand, within Pf6N2E2_3630 at 4227.428 kb on - strand, within Pf6N2E2_3630 at 4227.895 kb on + strand, within Pf6N2E2_3630 at 4227.895 kb on + strand, within Pf6N2E2_3630 at 4227.895 kb on + strand, within Pf6N2E2_3630 at 4227.896 kb on - strand, within Pf6N2E2_3630 at 4227.896 kb on - strand, within Pf6N2E2_3630 at 4228.240 kb on - strand at 4228.294 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2 remove 4,226,138 - Pf6N2E2_3629 0.58 +1.0 4,226,138 - Pf6N2E2_3629 0.58 +0.0 4,226,140 + Pf6N2E2_3629 0.58 +0.0 4,226,140 + Pf6N2E2_3629 0.58 +0.0 4,226,141 - Pf6N2E2_3629 0.58 -0.7 4,226,141 - Pf6N2E2_3629 0.58 +1.0 4,226,141 - Pf6N2E2_3629 0.58 -0.5 4,226,141 - Pf6N2E2_3629 0.58 +1.0 4,226,172 - Pf6N2E2_3629 0.60 -0.6 4,226,178 + Pf6N2E2_3629 0.60 +1.0 4,226,287 + Pf6N2E2_3629 0.67 -1.0 4,226,288 - Pf6N2E2_3629 0.67 -0.4 4,226,365 + Pf6N2E2_3629 0.71 +1.0 4,226,365 + Pf6N2E2_3629 0.71 -0.2 4,226,365 + Pf6N2E2_3629 0.71 -1.0 4,226,365 + Pf6N2E2_3629 0.71 +0.1 4,226,365 + Pf6N2E2_3629 0.71 +1.0 4,226,365 + +1.0 4,226,366 - Pf6N2E2_3629 0.71 +1.0 4,226,618 - Pf6N2E2_3629 0.85 +0.0 4,226,618 - Pf6N2E2_3629 0.85 +0.0 4,226,621 + Pf6N2E2_3629 0.86 +0.2 4,227,019 + +1.0 4,227,020 - +1.0 4,227,082 + +0.0 4,227,082 + +1.0 4,227,082 + +0.0 4,227,082 + -6.9 4,227,083 - +1.0 4,227,083 - +1.0 4,227,083 - +1.0 4,227,083 - +0.0 4,227,083 - +1.0 4,227,083 - -2.7 4,227,355 + Pf6N2E2_3630 0.26 +1.0 4,227,356 - Pf6N2E2_3630 0.26 +1.0 4,227,356 - Pf6N2E2_3630 0.26 -7.2 4,227,356 - Pf6N2E2_3630 0.26 +1.0 4,227,394 + Pf6N2E2_3630 0.29 -6.7 4,227,427 + Pf6N2E2_3630 0.31 -6.2 4,227,428 - Pf6N2E2_3630 0.32 +1.0 4,227,428 - Pf6N2E2_3630 0.32 +1.0 4,227,895 + Pf6N2E2_3630 0.70 +1.0 4,227,895 + Pf6N2E2_3630 0.70 -3.1 4,227,895 + Pf6N2E2_3630 0.70 +1.0 4,227,896 - Pf6N2E2_3630 0.70 +0.0 4,227,896 - Pf6N2E2_3630 0.70 +0.0 4,228,240 - +0.0 4,228,294 + +0.0
Or see this region's nucleotide sequence