Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3234

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
3,738,318	+		Pf6N2E2_3233	0.46	+0.1
3,738,318	+		Pf6N2E2_3233	0.46	+1.1
3,738,318	+		Pf6N2E2_3233	0.46	-0.5
3,738,318	+		Pf6N2E2_3233	0.46	+1.1
3,738,318	+		Pf6N2E2_3233	0.46	+0.1
3,738,318	+		Pf6N2E2_3233	0.46	+0.1
3,738,319	-		Pf6N2E2_3233	0.46	+0.1
3,738,319	-		Pf6N2E2_3233	0.46	+1.1
3,738,321	+		Pf6N2E2_3233	0.46	+1.1
3,738,321	+		Pf6N2E2_3233	0.46	+1.1
3,738,322	-		Pf6N2E2_3233	0.46	-0.2
3,738,504	+		Pf6N2E2_3233	0.57	+1.1
3,738,505	-		Pf6N2E2_3233	0.57	+1.1
3,738,505	-		Pf6N2E2_3233	0.57	-0.3
3,739,003	-		Pf6N2E2_3233	0.88	+1.1
3,739,003	-		Pf6N2E2_3233	0.88	-0.5
3,739,146	+				+1.1
3,739,217	+				+1.1
3,739,217	+				+1.1
3,739,217	+				-0.1
3,739,217	+				+1.1
3,739,218	-				+0.1
3,739,218	-				+0.2
3,739,219	+				-1.1
3,739,219	+				-0.7
3,739,220	-				+0.1
3,739,220	-				-0.6
3,739,220	-				+1.1
3,739,220	-				+1.1
3,739,220	-				-0.5
3,739,223	+				+1.1
3,739,223	+				-1.5
3,739,223	+				-0.3
3,739,223	+				+1.1
3,739,223	+				+1.1
3,739,223	+				-0.5
3,739,225	+				+1.1
3,739,303	-				+1.1
3,739,305	-				+1.1
3,739,305	-				+1.1
3,739,305	-				-0.6
3,739,351	+				+1.1
3,739,352	-				+1.1
3,739,412	+		Pf6N2E2_3234	0.13	+0.1
3,739,412	+		Pf6N2E2_3234	0.13	+1.1
3,739,413	-		Pf6N2E2_3234	0.13	-0.5
3,739,445	+		Pf6N2E2_3234	0.16	+1.1
3,739,700	+		Pf6N2E2_3234	0.40	-0.9
3,739,700	+		Pf6N2E2_3234	0.40	-0.8
3,739,701	-		Pf6N2E2_3234	0.40	+0.1
3,739,701	-		Pf6N2E2_3234	0.40	+0.1
3,739,797	-		Pf6N2E2_3234	0.49	+1.1
3,740,282	+				-0.5
3,740,283	-				+0.4
3,740,628	+				-0.5
3,740,629	-				+1.1
3,740,659	+				+0.1
3,740,666	+				-0.2
3,740,667	-				-0.5
3,740,718	+				-0.5
3,740,788	-				+0.1
3,740,961	-				-0.5
3,741,055	-		Pf6N2E2_3237	0.42	-0.5
3,741,080	+		Pf6N2E2_3237	0.53	-1.3
3,741,080	+		Pf6N2E2_3237	0.53	+1.1
3,741,096	-		Pf6N2E2_3237	0.60	+1.1
3,741,186	+				+1.1
3,741,186	+				-0.8
3,741,187	-				-0.5
3,741,187	-				-0.9
3,741,187	-				-0.9
3,741,187	-				+0.1
3,741,187	-				+0.1
3,741,187	-				+1.1
3,741,204	+				-1.3
3,741,204	+				+0.1
3,741,204	+				+0.1
3,741,204	+				+0.1
3,741,205	-				+0.1
3,741,205	-				-0.6
3,741,205	-				+0.1
3,741,205	-				-0.5
3,741,205	-				+1.1
3,741,205	-				-0.8
3,741,205	-				+1.1
3,741,205	-				+2.1
3,741,261	+				+0.1
3,741,261	+				+1.1
3,741,261	+				+0.1
3,741,262	-				-1.3
3,741,262	-				+1.1
3,741,262	-				+0.1
3,741,262	-				+0.1
3,741,262	-				+1.1
3,741,262	-				+1.1
3,741,262	-				+0.7
3,741,271	+				-0.9
3,741,272	-				+0.3
3,741,272	-				+1.1
3,741,272	-				-1.1
3,741,272	-				+0.1
3,741,272	-				-0.0
3,741,272	-				-0.9
3,741,272	-				+1.1
3,741,272	-				+1.1