Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3221

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
3,726,495	+		Pf6N2E2_3220	0.52	+0.1
3,726,499	+		Pf6N2E2_3220	0.52	-0.7
3,726,500	-		Pf6N2E2_3220	0.52	+0.1
3,726,500	-		Pf6N2E2_3220	0.52	+1.1
3,726,703	+		Pf6N2E2_3220	0.66	+1.7
3,726,704	-		Pf6N2E2_3220	0.66	+0.1
3,726,704	-		Pf6N2E2_3220	0.66	+0.1
3,726,704	-		Pf6N2E2_3220	0.66	+0.1
3,726,705	+		Pf6N2E2_3220	0.66	+1.1
3,726,705	+		Pf6N2E2_3220	0.66	-0.2
3,726,706	-		Pf6N2E2_3220	0.66	+0.1
3,726,706	-		Pf6N2E2_3220	0.66	+0.1
3,726,727	+		Pf6N2E2_3220	0.67	+0.1
3,726,881	+		Pf6N2E2_3220	0.77	-0.7
3,726,882	-		Pf6N2E2_3220	0.77	-0.5
3,726,927	+		Pf6N2E2_3220	0.80	+1.1
3,726,927	+		Pf6N2E2_3220	0.80	+1.1
3,726,927	+		Pf6N2E2_3220	0.80	-0.5
3,726,928	-		Pf6N2E2_3220	0.81	+0.1
3,726,928	-		Pf6N2E2_3220	0.81	-0.5
3,727,005	+		Pf6N2E2_3220	0.86	-1.5
3,727,005	+		Pf6N2E2_3220	0.86	-0.3
3,727,006	-		Pf6N2E2_3220	0.86	+0.4
3,727,006	-		Pf6N2E2_3220	0.86	+0.1
3,727,080	+				-1.7
3,727,081	-				+0.3
3,727,130	-				+1.1
3,727,314	+				-0.5
3,727,315	-				-0.7
3,727,469	+				+0.1
3,727,470	-				+1.1
3,727,470	-				-1.0
3,727,491	-		Pf6N2E2_3221	0.11	+1.1
3,727,718	+		Pf6N2E2_3221	0.53	-0.5
3,727,718	+		Pf6N2E2_3221	0.53	+1.1
3,727,719	-		Pf6N2E2_3221	0.53	-0.9
3,728,027	+				+1.1
3,728,027	+				-0.4
3,728,031	+				+0.3
3,728,031	+				-0.5
3,728,031	+				+0.1
3,728,031	+				+1.1
3,728,031	+				-1.7
3,728,032	-				+0.1
3,728,032	-				+1.1
3,728,032	-				-0.5
3,728,036	+				-0.4
3,728,043	-				+1.1
3,728,125	-				+0.1
3,728,273	+		Pf6N2E2_3222	0.25	-0.4
3,728,273	+		Pf6N2E2_3222	0.25	+0.1
3,728,325	-		Pf6N2E2_3222	0.32	+1.1
3,728,396	+		Pf6N2E2_3222	0.41	+0.1
3,728,396	+		Pf6N2E2_3222	0.41	+1.1
3,728,396	+		Pf6N2E2_3222	0.41	+0.1
3,728,396	+		Pf6N2E2_3222	0.41	+1.1
3,728,396	+		Pf6N2E2_3222	0.41	+1.1
3,728,396	+		Pf6N2E2_3222	0.41	+0.1
3,728,396	+		Pf6N2E2_3222	0.41	-0.2
3,728,396	+		Pf6N2E2_3222	0.41	-0.5
3,728,396	+		Pf6N2E2_3222	0.41	+1.1
3,728,396	+		Pf6N2E2_3222	0.41	-0.5
3,728,397	-		Pf6N2E2_3222	0.41	+0.1
3,728,397	-		Pf6N2E2_3222	0.41	-1.0
3,728,397	-		Pf6N2E2_3222	0.41	+1.1
3,728,397	-		Pf6N2E2_3222	0.41	+1.1
3,728,397	-		Pf6N2E2_3222	0.41	+0.1
3,728,397	-		Pf6N2E2_3222	0.41	-0.5
3,728,397	-		Pf6N2E2_3222	0.41	+1.1
3,728,397	-		Pf6N2E2_3222	0.41	+1.1
3,728,399	+		Pf6N2E2_3222	0.41	+0.1
3,728,399	+		Pf6N2E2_3222	0.41	+1.1
3,728,399	+		Pf6N2E2_3222	0.41	-0.7
3,728,399	+		Pf6N2E2_3222	0.41	-0.4
3,728,399	+		Pf6N2E2_3222	0.41	-0.7
3,728,399	+		Pf6N2E2_3222	0.41	+0.3
3,728,400	-		Pf6N2E2_3222	0.42	-0.8
3,728,400	-		Pf6N2E2_3222	0.42	+1.1
3,728,462	+		Pf6N2E2_3222	0.50	+0.1
3,728,462	+		Pf6N2E2_3222	0.50	-0.5
3,728,474	+		Pf6N2E2_3222	0.51	-0.9
3,728,493	-		Pf6N2E2_3222	0.54	+1.1
3,728,496	+		Pf6N2E2_3222	0.54	+1.7
3,728,497	-		Pf6N2E2_3222	0.54	-0.1
3,728,497	-		Pf6N2E2_3222	0.54	-0.2
3,728,676	+		Pf6N2E2_3222	0.78	+1.1
3,728,676	+		Pf6N2E2_3222	0.78	-0.5
3,728,676	+		Pf6N2E2_3222	0.78	-0.5
3,728,677	-		Pf6N2E2_3222	0.78	+0.1
3,728,677	-		Pf6N2E2_3222	0.78	-0.0
3,728,677	-		Pf6N2E2_3222	0.78	+1.1
3,728,677	-		Pf6N2E2_3222	0.78	-0.2
3,728,720	+		Pf6N2E2_3222	0.84	+0.1
3,728,720	+		Pf6N2E2_3222	0.84	+1.1
3,728,779	+				+1.1
3,728,837	+				+0.1
3,728,876	-				+0.6
3,728,876	-				-0.5