Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3003

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
3,492,280	+		Pf6N2E2_3002	0.29	+0.0
3,492,281	-		Pf6N2E2_3002	0.29	+0.0
3,492,281	-		Pf6N2E2_3002	0.29	+0.0
3,492,373	+		Pf6N2E2_3002	0.38	+0.5
3,492,430	+		Pf6N2E2_3002	0.44	-3.0
3,492,431	-		Pf6N2E2_3002	0.44	+1.0
3,492,552	-		Pf6N2E2_3002	0.55	+1.0
3,492,552	-		Pf6N2E2_3002	0.55	+1.0
3,492,666	-		Pf6N2E2_3002	0.66	+1.0
3,492,886	+		Pf6N2E2_3002	0.87	+0.0
3,492,886	+		Pf6N2E2_3002	0.87	+1.0
3,492,886	+		Pf6N2E2_3002	0.87	+1.0
3,492,886	+		Pf6N2E2_3002	0.87	+0.5
3,492,886	+		Pf6N2E2_3002	0.87	+0.0
3,492,886	+		Pf6N2E2_3002	0.87	-0.6
3,492,886	+		Pf6N2E2_3002	0.87	-0.9
3,492,887	-		Pf6N2E2_3002	0.88	-0.4
3,492,887	-		Pf6N2E2_3002	0.88	+1.0
3,492,887	-		Pf6N2E2_3002	0.88	+0.0
3,492,887	-		Pf6N2E2_3002	0.88	-0.5
3,492,887	-		Pf6N2E2_3002	0.88	+1.0
3,493,016	+				+0.0
3,493,016	+				+1.0
3,493,017	-				-0.3
3,493,017	-				+1.0
3,493,017	-				+0.0
3,493,032	+				+0.7
3,493,032	+				+0.0
3,493,032	+				-0.4
3,493,032	+				-0.2
3,493,032	+				+0.0
3,493,032	+				+0.0
3,493,032	+				+1.0
3,493,033	-				+1.0
3,493,033	-				+0.0
3,493,033	-				+0.5
3,493,033	-				+1.0
3,493,033	-				+1.0
3,493,033	-				+1.0
3,493,033	-				-0.4
3,493,182	-		Pf6N2E2_3003	0.44	-1.3
3,493,182	-		Pf6N2E2_3003	0.44	-0.3
3,493,182	-		Pf6N2E2_3003	0.44	+0.0
3,493,449	+				+1.0
3,493,449	+				+0.0
3,493,450	-				+1.0
3,493,642	+		Pf6N2E2_3004	0.47	+1.0
3,493,642	+		Pf6N2E2_3004	0.47	+1.0
3,493,642	+		Pf6N2E2_3004	0.47	-0.3
3,493,905	+				-0.5
3,493,905	+				+1.0
3,493,967	+				-0.2
3,493,967	+				-0.5
3,494,080	-				-0.5
3,494,132	+				+1.0
3,494,132	+				+0.6
3,494,132	+				-0.7
3,494,191	+		Pf6N2E2_3005	0.14	-1.3
3,494,249	+		Pf6N2E2_3005	0.20	+1.0