Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2859

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
3,349,042	+		Pf6N2E2_2857	0.60	+0.5
3,349,153	+		Pf6N2E2_2857	0.83	+1.0
3,349,153	+		Pf6N2E2_2857	0.83	+1.0
3,349,154	-		Pf6N2E2_2857	0.83	+1.0
3,349,154	-		Pf6N2E2_2857	0.83	-1.0
3,349,190	-				+0.7
3,349,190	-				-0.6
3,349,252	-				+1.0
3,349,305	+				-0.0
3,349,330	+		Pf6N2E2_2858	0.10	+1.0
3,349,330	+		Pf6N2E2_2858	0.10	-0.0
3,349,362	+		Pf6N2E2_2858	0.15	-0.0
3,349,363	-		Pf6N2E2_2858	0.15	-0.6
3,349,363	-		Pf6N2E2_2858	0.15	+1.0
3,349,428	-		Pf6N2E2_2858	0.26	-1.3
3,349,833	+				+1.0
3,349,833	+				-0.0
3,349,834	-				-1.5
3,349,834	-				-0.0
3,349,873	-				-0.6
3,349,873	-				-0.0
3,349,959	+		Pf6N2E2_2859	0.14	+1.0
3,349,990	+		Pf6N2E2_2859	0.21	+1.0
3,349,991	-		Pf6N2E2_2859	0.21	-0.4
3,349,991	-		Pf6N2E2_2859	0.21	+1.0
3,349,991	-		Pf6N2E2_2859	0.21	+1.0
3,350,025	+		Pf6N2E2_2859	0.28	+1.0
3,350,025	+		Pf6N2E2_2859	0.28	-0.2
3,350,025	+		Pf6N2E2_2859	0.28	-0.3
3,350,025	+		Pf6N2E2_2859	0.28	-0.2
3,350,026	-		Pf6N2E2_2859	0.28	+1.0
3,350,026	-		Pf6N2E2_2859	0.28	+0.4
3,350,026	-		Pf6N2E2_2859	0.28	+1.0
3,350,026	-		Pf6N2E2_2859	0.28	-0.6
3,350,026	-		Pf6N2E2_2859	0.28	+0.5
3,350,026	-		Pf6N2E2_2859	0.28	+1.0
3,350,043	-		Pf6N2E2_2859	0.31	-0.0
3,350,080	-		Pf6N2E2_2859	0.39	-0.0
3,350,082	+		Pf6N2E2_2859	0.39	-0.3
3,350,157	+		Pf6N2E2_2859	0.55	-1.8
3,350,157	+		Pf6N2E2_2859	0.55	+0.2
3,350,158	-		Pf6N2E2_2859	0.55	-0.0
3,350,199	+		Pf6N2E2_2859	0.63	-0.0
3,350,200	-		Pf6N2E2_2859	0.64	-0.0
3,350,200	-		Pf6N2E2_2859	0.64	+1.0
3,350,200	-		Pf6N2E2_2859	0.64	+1.4
3,350,200	-		Pf6N2E2_2859	0.64	-0.5
3,350,314	+		Pf6N2E2_2859	0.87	+0.4
3,350,355	+				-1.8
3,350,420	+				+1.0
3,350,420	+				-0.0
3,350,420	+				+1.0
3,350,421	-				-1.0
3,350,421	-				-0.0
3,350,421	-				-0.0
3,350,421	-				+1.0
3,350,421	-				-0.0
3,350,421	-				-1.0
3,350,494	+				+1.0
3,350,526	-		Pf6N2E2_2860	0.10	-1.0
3,350,712	+		Pf6N2E2_2860	0.38	+1.0
3,350,713	-		Pf6N2E2_2860	0.38	-0.6
3,350,718	+		Pf6N2E2_2860	0.39	+1.0
3,350,847	-		Pf6N2E2_2860	0.59	+1.0
3,350,879	+		Pf6N2E2_2860	0.63	+1.0
3,350,879	+		Pf6N2E2_2860	0.63	+0.2
3,350,880	-		Pf6N2E2_2860	0.64	+1.3
3,350,930	+		Pf6N2E2_2860	0.71	-0.0
3,350,931	-		Pf6N2E2_2860	0.71	-1.3
3,350,973	-		Pf6N2E2_2860	0.78	-0.0
3,351,070	+				+1.0
3,351,070	+				+1.0
3,351,070	+				+1.0
3,351,071	-				-0.0
3,351,071	-				+1.0
3,351,071	-				-0.8
3,351,121	+				-0.0
3,351,122	-				-0.0
3,351,143	+				-0.0
3,351,213	+		Pf6N2E2_2861	0.32	+1.0
3,351,255	-		Pf6N2E2_2861	0.54	-0.8
3,351,315	+		Pf6N2E2_2861	0.86	+1.0
3,351,315	+		Pf6N2E2_2861	0.86	+1.0
3,351,315	+		Pf6N2E2_2861	0.86	-0.0
3,351,316	-		Pf6N2E2_2861	0.86	-0.4
3,351,316	-		Pf6N2E2_2861	0.86	-0.5
3,351,316	-		Pf6N2E2_2861	0.86	-0.0
3,351,316	-		Pf6N2E2_2861	0.86	+1.0
3,351,316	-		Pf6N2E2_2861	0.86	-1.0