Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2815

Experiment: Ying_OrganicAcid7 rep C; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 2
3,301,973	+		Pf6N2E2_2814	0.32	-0.0
3,301,973	+		Pf6N2E2_2814	0.32	-1.4
3,301,974	-		Pf6N2E2_2814	0.32	-0.5
3,301,974	-		Pf6N2E2_2814	0.32	-0.4
3,302,003	+		Pf6N2E2_2814	0.36	-0.0
3,302,003	+		Pf6N2E2_2814	0.36	+1.0
3,302,003	+		Pf6N2E2_2814	0.36	-0.6
3,302,003	+		Pf6N2E2_2814	0.36	-0.6
3,302,003	+		Pf6N2E2_2814	0.36	-0.0
3,302,003	+		Pf6N2E2_2814	0.36	+1.0
3,302,003	+		Pf6N2E2_2814	0.36	-0.6
3,302,003	+		Pf6N2E2_2814	0.36	-0.6
3,302,003	+		Pf6N2E2_2814	0.36	-1.0
3,302,004	-		Pf6N2E2_2814	0.36	-1.0
3,302,004	-		Pf6N2E2_2814	0.36	-0.5
3,302,004	-		Pf6N2E2_2814	0.36	-1.7
3,302,004	-		Pf6N2E2_2814	0.36	+0.5
3,302,004	-		Pf6N2E2_2814	0.36	-0.5
3,302,004	-		Pf6N2E2_2814	0.36	-0.0
3,302,004	-		Pf6N2E2_2814	0.36	-0.0
3,302,036	+		Pf6N2E2_2814	0.39	-0.5
3,302,036	+		Pf6N2E2_2814	0.39	+1.0
3,302,037	-		Pf6N2E2_2814	0.39	+1.0
3,302,037	-		Pf6N2E2_2814	0.39	+1.0
3,302,037	-		Pf6N2E2_2814	0.39	+0.4
3,302,165	+		Pf6N2E2_2814	0.54	-0.8
3,302,565	+				+1.0
3,302,565	+				+1.0
3,302,565	+				-0.6
3,302,566	-				+1.0
3,302,566	-				-1.2
3,302,566	-				-0.6
3,302,566	-				-0.6
3,302,589	+				+1.0
3,302,589	+				+1.0
3,302,589	+				-0.0
3,302,589	+				+0.8
3,302,589	+				+1.0
3,302,590	-				-0.3
3,302,590	-				-0.6
3,302,590	-				-1.0
3,302,590	-				-0.0
3,302,591	+				+1.0
3,302,591	+				+1.0
3,302,591	+				+0.7
3,302,591	+				-0.5
3,302,591	+				-0.0
3,302,591	+				-1.0
3,302,591	+				-0.3
3,302,591	+				+1.0
3,302,591	+				-1.6
3,302,591	+				-0.0
3,302,591	+				+1.0
3,302,591	+				+1.0
3,302,591	+				+1.0
3,302,592	-				+1.0
3,302,592	-				-1.0
3,302,592	-				+1.0
3,302,592	-				-0.0
3,302,592	-				-0.5
3,302,592	-				+1.0
3,302,592	-				-0.0
3,302,592	-				-0.4
3,302,592	-				-0.0
3,302,592	-				-1.0
3,302,592	-				+1.0
3,302,592	-				-0.4
3,302,592	-				-1.0
3,302,629	+				-0.0
3,302,629	+				+2.0
3,302,630	-				-0.0
3,302,630	-				+1.0
3,302,633	+				-1.2
3,302,634	-				-1.0
3,302,634	-				+1.0
3,302,634	-				-0.0
3,302,634	-				-1.0
3,302,661	+				-0.6
3,302,881	+		Pf6N2E2_2815	0.23	-1.0
3,302,881	+		Pf6N2E2_2815	0.23	-0.0
3,302,881	+		Pf6N2E2_2815	0.23	+1.0
3,302,881	+		Pf6N2E2_2815	0.23	+1.0
3,302,881	+		Pf6N2E2_2815	0.23	+1.0
3,302,882	-		Pf6N2E2_2815	0.23	+1.0
3,302,882	-		Pf6N2E2_2815	0.23	+1.0
3,302,882	-		Pf6N2E2_2815	0.23	-1.0
3,302,882	-		Pf6N2E2_2815	0.23	+1.0
3,302,882	-		Pf6N2E2_2815	0.23	-0.0
3,302,990	-		Pf6N2E2_2815	0.37	-0.0
3,303,057	+		Pf6N2E2_2815	0.46	-0.6
3,303,142	+		Pf6N2E2_2815	0.57	+1.0
3,303,148	+		Pf6N2E2_2815	0.58	-1.8
3,303,148	+		Pf6N2E2_2815	0.58	-0.6
3,303,148	+		Pf6N2E2_2815	0.58	-0.0
3,303,149	-		Pf6N2E2_2815	0.58	+1.0
3,303,149	-		Pf6N2E2_2815	0.58	+1.0
3,303,229	+		Pf6N2E2_2815	0.69	+1.0
3,303,229	+		Pf6N2E2_2815	0.69	-0.6
3,303,331	+		Pf6N2E2_2815	0.82	-0.0
3,303,332	-		Pf6N2E2_2815	0.82	-1.3
3,303,332	-		Pf6N2E2_2815	0.82	-0.0
3,303,437	-				+1.0
3,303,483	+				-0.6
3,303,484	-				+1.0
3,303,484	-				-0.0
3,303,502	+				+1.0
3,303,502	+				-1.0
3,303,503	-				+1.0
3,303,511	+				+1.0
3,303,512	-				+1.0
3,304,313	+				+1.0
3,304,313	+				-0.6
3,304,313	+				-1.0
3,304,313	+				+1.0
3,304,313	+				-0.0
3,304,313	+				+1.0
3,304,394	+		Pf6N2E2_2817	0.14	+1.0
3,304,394	+		Pf6N2E2_2817	0.14	-0.2
3,304,394	+		Pf6N2E2_2817	0.14	+1.0
3,304,395	-		Pf6N2E2_2817	0.14	-0.6
3,304,395	-		Pf6N2E2_2817	0.14	-0.5