Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2162

Experiment: Ying_OrganicAcid7 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2161 and Pf6N2E2_2162 are separated by 603 nucleotidesPf6N2E2_2162 and Pf6N2E2_2163 are separated by 251 nucleotides Pf6N2E2_2161 - Conserved domain protein, at 2,564,966 to 2,565,589 _2161 Pf6N2E2_2162 - Cytochrome c4, at 2,566,193 to 2,566,855 _2162 Pf6N2E2_2163 - Lysine 2,3-aminomutase (EC 5.4.3.2), at 2,567,107 to 2,568,504 _2163 Position (kb) 2566 2567Strain fitness (log2 ratio) -2 -1 0 1at 2565.346 kb on - strand, within Pf6N2E2_2161at 2565.346 kb on - strand, within Pf6N2E2_2161at 2565.500 kb on + strand, within Pf6N2E2_2161at 2565.501 kb on - strand, within Pf6N2E2_2161at 2565.710 kb on - strandat 2565.710 kb on - strandat 2565.719 kb on - strandat 2565.724 kb on + strandat 2565.725 kb on - strandat 2565.725 kb on - strandat 2565.741 kb on - strandat 2565.747 kb on - strandat 2565.779 kb on - strandat 2565.779 kb on - strandat 2565.815 kb on - strandat 2565.815 kb on - strandat 2565.815 kb on - strandat 2565.891 kb on - strandat 2566.095 kb on + strandat 2566.110 kb on + strandat 2566.120 kb on - strandat 2566.270 kb on + strand, within Pf6N2E2_2162at 2566.270 kb on + strand, within Pf6N2E2_2162at 2566.628 kb on + strand, within Pf6N2E2_2162at 2566.628 kb on + strand, within Pf6N2E2_2162at 2566.629 kb on - strand, within Pf6N2E2_2162at 2566.629 kb on - strand, within Pf6N2E2_2162at 2566.629 kb on - strand, within Pf6N2E2_2162at 2566.629 kb on - strand, within Pf6N2E2_2162at 2566.629 kb on - strand, within Pf6N2E2_2162at 2566.853 kb on + strandat 2566.870 kb on + strandat 2566.871 kb on - strandat 2566.874 kb on + strandat 2566.875 kb on - strandat 2566.875 kb on - strandat 2566.875 kb on - strandat 2566.912 kb on + strandat 2566.920 kb on + strandat 2566.920 kb on + strandat 2566.992 kb on + strandat 2567.074 kb on - strandat 2567.198 kb on + strandat 2567.313 kb on + strand, within Pf6N2E2_2163at 2567.425 kb on + strand, within Pf6N2E2_2163at 2567.425 kb on + strand, within Pf6N2E2_2163at 2567.425 kb on + strand, within Pf6N2E2_2163at 2567.425 kb on + strand, within Pf6N2E2_2163at 2567.425 kb on + strand, within Pf6N2E2_2163at 2567.426 kb on - strand, within Pf6N2E2_2163at 2567.426 kb on - strand, within Pf6N2E2_2163at 2567.427 kb on + strand, within Pf6N2E2_2163at 2567.427 kb on + strand, within Pf6N2E2_2163at 2567.427 kb on + strand, within Pf6N2E2_2163at 2567.427 kb on + strand, within Pf6N2E2_2163at 2567.427 kb on + strand, within Pf6N2E2_2163at 2567.427 kb on + strand, within Pf6N2E2_2163at 2567.428 kb on - strand, within Pf6N2E2_2163at 2567.428 kb on - strand, within Pf6N2E2_2163at 2567.428 kb on - strand, within Pf6N2E2_2163at 2567.459 kb on - strand, within Pf6N2E2_2163at 2567.654 kb on - strand, within Pf6N2E2_2163at 2567.738 kb on + strand, within Pf6N2E2_2163at 2567.738 kb on + strand, within Pf6N2E2_2163at 2567.738 kb on + strand, within Pf6N2E2_2163at 2567.738 kb on + strand, within Pf6N2E2_2163at 2567.738 kb on + strand, within Pf6N2E2_2163at 2567.739 kb on - strand, within Pf6N2E2_2163at 2567.739 kb on - strand, within Pf6N2E2_2163at 2567.739 kb on - strand, within Pf6N2E2_2163at 2567.765 kb on + strand, within Pf6N2E2_2163at 2567.765 kb on + strand, within Pf6N2E2_2163at 2567.765 kb on + strand, within Pf6N2E2_2163at 2567.766 kb on - strand, within Pf6N2E2_2163at 2567.766 kb on - strand, within Pf6N2E2_2163at 2567.766 kb on - strand, within Pf6N2E2_2163at 2567.766 kb on - strand, within Pf6N2E2_2163at 2567.766 kb on - strand, within Pf6N2E2_2163at 2567.766 kb on - strand, within Pf6N2E2_2163at 2567.849 kb on + strand, within Pf6N2E2_2163at 2567.849 kb on + strand, within Pf6N2E2_2163at 2567.850 kb on - strand, within Pf6N2E2_2163

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep C; time point 2
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2,565,346 - Pf6N2E2_2161 0.61 +1.3
2,565,346 - Pf6N2E2_2161 0.61 +0.9
2,565,500 + Pf6N2E2_2161 0.86 +0.9
2,565,501 - Pf6N2E2_2161 0.86 -0.7
2,565,710 - +0.9
2,565,710 - -0.1
2,565,719 - +0.9
2,565,724 + +0.9
2,565,725 - -0.5
2,565,725 - +0.9
2,565,741 - -0.7
2,565,747 - -0.7
2,565,779 - -1.4
2,565,779 - +0.9
2,565,815 - +0.9
2,565,815 - +0.9
2,565,815 - +0.9
2,565,891 - +0.9
2,566,095 + -0.7
2,566,110 + +0.9
2,566,120 - +0.9
2,566,270 + Pf6N2E2_2162 0.12 -2.3
2,566,270 + Pf6N2E2_2162 0.12 -0.7
2,566,628 + Pf6N2E2_2162 0.66 +0.9
2,566,628 + Pf6N2E2_2162 0.66 +0.9
2,566,629 - Pf6N2E2_2162 0.66 -1.7
2,566,629 - Pf6N2E2_2162 0.66 -0.1
2,566,629 - Pf6N2E2_2162 0.66 +0.9
2,566,629 - Pf6N2E2_2162 0.66 -0.7
2,566,629 - Pf6N2E2_2162 0.66 -0.1
2,566,853 + +0.9
2,566,870 + +0.9
2,566,871 - -0.1
2,566,874 + +1.2
2,566,875 - +0.9
2,566,875 - +0.9
2,566,875 - +0.9
2,566,912 + +0.9
2,566,920 + +0.9
2,566,920 + -0.7
2,566,992 + +0.9
2,567,074 - -0.1
2,567,198 + +0.9
2,567,313 + Pf6N2E2_2163 0.15 +0.3
2,567,425 + Pf6N2E2_2163 0.23 +0.9
2,567,425 + Pf6N2E2_2163 0.23 +0.9
2,567,425 + Pf6N2E2_2163 0.23 +0.9
2,567,425 + Pf6N2E2_2163 0.23 +0.9
2,567,425 + Pf6N2E2_2163 0.23 -0.1
2,567,426 - Pf6N2E2_2163 0.23 +0.9
2,567,426 - Pf6N2E2_2163 0.23 -0.1
2,567,427 + Pf6N2E2_2163 0.23 +0.5
2,567,427 + Pf6N2E2_2163 0.23 +0.9
2,567,427 + Pf6N2E2_2163 0.23 +0.9
2,567,427 + Pf6N2E2_2163 0.23 +0.9
2,567,427 + Pf6N2E2_2163 0.23 -0.2
2,567,427 + Pf6N2E2_2163 0.23 +0.4
2,567,428 - Pf6N2E2_2163 0.23 +0.9
2,567,428 - Pf6N2E2_2163 0.23 +0.9
2,567,428 - Pf6N2E2_2163 0.23 +0.9
2,567,459 - Pf6N2E2_2163 0.25 +0.5
2,567,654 - Pf6N2E2_2163 0.39 -0.1
2,567,738 + Pf6N2E2_2163 0.45 +0.9
2,567,738 + Pf6N2E2_2163 0.45 -0.5
2,567,738 + Pf6N2E2_2163 0.45 -0.4
2,567,738 + Pf6N2E2_2163 0.45 +0.9
2,567,738 + Pf6N2E2_2163 0.45 +0.9
2,567,739 - Pf6N2E2_2163 0.45 -0.1
2,567,739 - Pf6N2E2_2163 0.45 -1.6
2,567,739 - Pf6N2E2_2163 0.45 -1.0
2,567,765 + Pf6N2E2_2163 0.47 -0.1
2,567,765 + Pf6N2E2_2163 0.47 +0.9
2,567,765 + Pf6N2E2_2163 0.47 +0.9
2,567,766 - Pf6N2E2_2163 0.47 +0.9
2,567,766 - Pf6N2E2_2163 0.47 +0.9
2,567,766 - Pf6N2E2_2163 0.47 +0.9
2,567,766 - Pf6N2E2_2163 0.47 +0.9
2,567,766 - Pf6N2E2_2163 0.47 -1.3
2,567,766 - Pf6N2E2_2163 0.47 +0.9
2,567,849 + Pf6N2E2_2163 0.53 -0.1
2,567,849 + Pf6N2E2_2163 0.53 -0.1
2,567,850 - Pf6N2E2_2163 0.53 +0.9

Or see this region's nucleotide sequence