Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_775

Experiment: Ying_OrganicAcid7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_773 and Pf6N2E2_774 overlap by 4 nucleotidesPf6N2E2_774 and Pf6N2E2_775 are separated by 4 nucleotidesPf6N2E2_775 and Pf6N2E2_776 overlap by 4 nucleotides Pf6N2E2_773 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 884,233 to 885,063 _773 Pf6N2E2_774 - Cold-shock DNA-binding domain, at 885,060 to 885,479 _774 Pf6N2E2_775 - FIG00955061: hypothetical protein, at 885,484 to 885,834 _775 Pf6N2E2_776 - Transcriptional regulator, LysR family, at 885,831 to 886,739 _776 Position (kb) 885 886Strain fitness (log2 ratio) -2 -1 0 1at 884.837 kb on - strand, within Pf6N2E2_773at 884.846 kb on - strand, within Pf6N2E2_773at 884.846 kb on - strand, within Pf6N2E2_773at 884.851 kb on + strand, within Pf6N2E2_773at 884.968 kb on + strand, within Pf6N2E2_773at 884.968 kb on + strand, within Pf6N2E2_773at 884.968 kb on + strand, within Pf6N2E2_773at 884.969 kb on - strand, within Pf6N2E2_773at 884.969 kb on - strand, within Pf6N2E2_773at 884.969 kb on - strand, within Pf6N2E2_773at 884.969 kb on - strand, within Pf6N2E2_773at 884.969 kb on - strand, within Pf6N2E2_773at 884.969 kb on - strand, within Pf6N2E2_773at 885.469 kb on - strandat 885.485 kb on + strandat 885.486 kb on - strandat 885.486 kb on - strandat 885.624 kb on - strand, within Pf6N2E2_775at 885.770 kb on + strand, within Pf6N2E2_775at 885.771 kb on - strand, within Pf6N2E2_775at 885.771 kb on - strand, within Pf6N2E2_775at 885.771 kb on - strand, within Pf6N2E2_775at 885.771 kb on - strand, within Pf6N2E2_775at 885.771 kb on - strand, within Pf6N2E2_775at 885.834 kb on + strandat 885.842 kb on + strandat 885.843 kb on - strandat 885.843 kb on - strandat 885.843 kb on - strandat 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strand, within Pf6N2E2_776at 886.006 kb on + strandat 886.006 kb on + strand, within Pf6N2E2_776at 886.007 kb on - strand, within Pf6N2E2_776at 886.007 kb on - strand, within Pf6N2E2_776at 886.007 kb on - strand, within Pf6N2E2_776at 886.010 kb on + strand, within Pf6N2E2_776at 886.010 kb on + strand, within Pf6N2E2_776at 886.011 kb on - strand, within Pf6N2E2_776at 886.020 kb on + strand, within Pf6N2E2_776at 886.367 kb on + strand, within Pf6N2E2_776at 886.367 kb on + strand, within Pf6N2E2_776at 886.388 kb on - strand, within Pf6N2E2_776at 886.410 kb on + strand, within Pf6N2E2_776at 886.546 kb on + strand, within Pf6N2E2_776at 886.546 kb on + strand, within Pf6N2E2_776at 886.714 kb on + strandat 886.714 kb on + strandat 886.714 kb on + strandat 886.717 kb on + strandat 886.717 kb on + strandat 886.718 kb on - strandat 886.718 kb on - strandat 886.773 kb on + strandat 886.774 kb on - strandat 886.811 kb on - strandat 886.814 kb on + strandat 886.814 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2
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884,837 - Pf6N2E2_773 0.73 +0.8
884,846 - Pf6N2E2_773 0.74 +0.8
884,846 - Pf6N2E2_773 0.74 -1.1
884,851 + Pf6N2E2_773 0.74 -0.2
884,968 + Pf6N2E2_773 0.88 +0.8
884,968 + Pf6N2E2_773 0.88 -0.2
884,968 + Pf6N2E2_773 0.88 -0.2
884,969 - Pf6N2E2_773 0.89 -0.2
884,969 - Pf6N2E2_773 0.89 -0.8
884,969 - Pf6N2E2_773 0.89 +0.8
884,969 - Pf6N2E2_773 0.89 -2.0
884,969 - Pf6N2E2_773 0.89 -0.2
884,969 - Pf6N2E2_773 0.89 +0.8
885,469 - +0.8
885,485 + -0.6
885,486 - -0.2
885,486 - +0.8
885,624 - Pf6N2E2_775 0.40 +0.8
885,770 + Pf6N2E2_775 0.81 -0.2
885,771 - Pf6N2E2_775 0.82 -0.8
885,771 - Pf6N2E2_775 0.82 +0.5
885,771 - Pf6N2E2_775 0.82 +0.8
885,771 - Pf6N2E2_775 0.82 +0.8
885,771 - Pf6N2E2_775 0.82 +0.8
885,834 + +0.8
885,842 + +0.8
885,843 - +0.7
885,843 - +0.8
885,843 - -0.8
886,006 + Pf6N2E2_776 0.19 +0.8
886,006 + Pf6N2E2_776 0.19 +0.8
886,006 + Pf6N2E2_776 0.19 -0.2
886,006 + Pf6N2E2_776 0.19 -0.2
886,006 + Pf6N2E2_776 0.19 +0.8
886,006 + +0.8
886,006 + Pf6N2E2_776 0.19 -0.5
886,007 - Pf6N2E2_776 0.19 -0.2
886,007 - Pf6N2E2_776 0.19 +0.8
886,007 - Pf6N2E2_776 0.19 -0.8
886,010 + Pf6N2E2_776 0.20 +0.8
886,010 + Pf6N2E2_776 0.20 -0.2
886,011 - Pf6N2E2_776 0.20 +0.8
886,020 + Pf6N2E2_776 0.21 +0.8
886,367 + Pf6N2E2_776 0.59 +0.8
886,367 + Pf6N2E2_776 0.59 +0.8
886,388 - Pf6N2E2_776 0.61 +0.8
886,410 + Pf6N2E2_776 0.64 +0.8
886,546 + Pf6N2E2_776 0.79 -0.8
886,546 + Pf6N2E2_776 0.79 +0.8
886,714 + -0.2
886,714 + -1.2
886,714 + -0.4
886,717 + -0.2
886,717 + +0.8
886,718 - +0.8
886,718 - +0.8
886,773 + -0.2
886,774 - -0.2
886,811 - +0.8
886,814 + -0.2
886,814 + -0.2

Or see this region's nucleotide sequence