Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_668

Experiment: Ying_OrganicAcid7 rep B; time point 2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_667 and Pf6N2E2_668 are separated by 55 nucleotidesPf6N2E2_668 and Pf6N2E2_669 are separated by 70 nucleotidesPf6N2E2_669 and Pf6N2E2_670 are separated by 137 nucleotides Pf6N2E2_667 - Dihydrolipoamide acetyltransferase component (E2) of acetoin dehydrogenase complex (EC 2.3.1.-), at 772,058 to 773,170 _667 Pf6N2E2_668 - 2,3-butanediol dehydrogenase, R-alcohol forming, (R)- and (S)-acetoin-specific (EC 1.1.1.4), at 773,226 to 774,320 _668 Pf6N2E2_669 - Nuclease inhibitor, at 774,391 to 774,945 _669 Pf6N2E2_670 - 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22), at 775,083 to 776,000 _670 Position (kb) 773 774 775Strain fitness (log2 ratio) -1 0 1at 772.782 kb on - strand, within Pf6N2E2_667at 772.895 kb on + strand, within Pf6N2E2_667at 772.895 kb on + strand, within Pf6N2E2_667at 772.896 kb on - strand, within Pf6N2E2_667at 772.896 kb on - strand, within Pf6N2E2_667at 772.948 kb on - strand, within Pf6N2E2_667at 772.989 kb on + strand, within Pf6N2E2_667at 772.990 kb on - strand, within Pf6N2E2_667at 773.388 kb on + strand, within Pf6N2E2_668at 773.388 kb on + strand, within Pf6N2E2_668at 773.389 kb on - strand, within Pf6N2E2_668at 773.568 kb on + strand, within Pf6N2E2_668at 773.568 kb on + strand, within Pf6N2E2_668at 773.569 kb on - strand, within Pf6N2E2_668at 773.569 kb on - strand, within Pf6N2E2_668at 773.572 kb on - strand, within Pf6N2E2_668at 773.572 kb on - strand, within Pf6N2E2_668at 773.572 kb on - strand, within Pf6N2E2_668at 773.572 kb on - strand, within Pf6N2E2_668at 773.590 kb on - strand, within Pf6N2E2_668at 773.676 kb on + strand, within Pf6N2E2_668at 773.676 kb on + strand, within Pf6N2E2_668at 774.147 kb on + strand, within Pf6N2E2_668at 774.148 kb on - strand, within Pf6N2E2_668at 774.148 kb on - strand, within Pf6N2E2_668at 774.148 kb on - strand, within Pf6N2E2_668at 774.466 kb on - strand, within Pf6N2E2_669at 774.466 kb on - strand, within Pf6N2E2_669at 774.746 kb on - strand, within Pf6N2E2_669at 774.782 kb on + strand, within Pf6N2E2_669at 774.783 kb on - strand, within Pf6N2E2_669at 774.783 kb on - strand, within Pf6N2E2_669at 774.858 kb on - strand, within Pf6N2E2_669at 774.938 kb on + strandat 774.938 kb on + strandat 774.939 kb on - strandat 775.072 kb on + strandat 775.084 kb on + strandat 775.147 kb on + strandat 775.147 kb on + strandat 775.148 kb on - strandat 775.148 kb on - strandat 775.288 kb on + strand, within Pf6N2E2_670at 775.288 kb on + strandat 775.289 kb on - strand, within Pf6N2E2_670at 775.289 kb on - strand, within Pf6N2E2_670at 775.289 kb on - strand, within Pf6N2E2_670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2
remove
772,782 - Pf6N2E2_667 0.65 -0.2
772,895 + Pf6N2E2_667 0.75 -0.4
772,895 + Pf6N2E2_667 0.75 +1.6
772,896 - Pf6N2E2_667 0.75 -0.8
772,896 - Pf6N2E2_667 0.75 -0.2
772,948 - Pf6N2E2_667 0.80 +0.8
772,989 + Pf6N2E2_667 0.84 -0.2
772,990 - Pf6N2E2_667 0.84 -0.2
773,388 + Pf6N2E2_668 0.15 +0.8
773,388 + Pf6N2E2_668 0.15 +0.8
773,389 - Pf6N2E2_668 0.15 -0.8
773,568 + Pf6N2E2_668 0.31 -0.8
773,568 + Pf6N2E2_668 0.31 +1.1
773,569 - Pf6N2E2_668 0.31 -0.5
773,569 - Pf6N2E2_668 0.31 +0.8
773,572 - Pf6N2E2_668 0.32 +0.8
773,572 - Pf6N2E2_668 0.32 +0.8
773,572 - Pf6N2E2_668 0.32 -1.2
773,572 - Pf6N2E2_668 0.32 -0.2
773,590 - Pf6N2E2_668 0.33 -0.2
773,676 + Pf6N2E2_668 0.41 -0.2
773,676 + Pf6N2E2_668 0.41 +0.8
774,147 + Pf6N2E2_668 0.84 +0.8
774,148 - Pf6N2E2_668 0.84 +0.8
774,148 - Pf6N2E2_668 0.84 +0.8
774,148 - Pf6N2E2_668 0.84 +0.8
774,466 - Pf6N2E2_669 0.14 -0.2
774,466 - Pf6N2E2_669 0.14 +0.8
774,746 - Pf6N2E2_669 0.64 -0.5
774,782 + Pf6N2E2_669 0.70 -0.2
774,783 - Pf6N2E2_669 0.71 +0.8
774,783 - Pf6N2E2_669 0.71 -0.8
774,858 - Pf6N2E2_669 0.84 +0.8
774,938 + +0.8
774,938 + +0.8
774,939 - +0.8
775,072 + -0.0
775,084 + +0.8
775,147 + -0.2
775,147 + +0.8
775,148 - +0.8
775,148 - +0.8
775,288 + Pf6N2E2_670 0.22 +0.8
775,288 + +0.8
775,289 - Pf6N2E2_670 0.22 -0.2
775,289 - Pf6N2E2_670 0.22 +0.8
775,289 - Pf6N2E2_670 0.22 -1.2

Or see this region's nucleotide sequence