Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5301

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
6,094,968	+		Pf6N2E2_5300	0.41	-0.7
6,094,968	+		Pf6N2E2_5300	0.41	+0.0
6,094,968	+		Pf6N2E2_5300	0.41	+0.0
6,094,968	+		Pf6N2E2_5300	0.41	+1.0
6,094,968	+		Pf6N2E2_5300	0.41	+1.0
6,094,968	+		Pf6N2E2_5300	0.41	+0.0
6,094,968	+		Pf6N2E2_5300	0.41	+1.0
6,094,969	-		Pf6N2E2_5300	0.41	-0.7
6,095,227	+		Pf6N2E2_5300	0.59	+0.3
6,095,227	+		Pf6N2E2_5300	0.59	+0.0
6,095,227	+		Pf6N2E2_5300	0.59	+1.0
6,095,227	+		Pf6N2E2_5300	0.59	-1.0
6,095,227	+		Pf6N2E2_5300	0.59	+0.0
6,095,227	+		Pf6N2E2_5300	0.59	-0.6
6,095,227	+		Pf6N2E2_5300	0.59	-0.6
6,095,227	+		Pf6N2E2_5300	0.59	+1.0
6,095,228	-		Pf6N2E2_5300	0.59	+1.0
6,095,228	-		Pf6N2E2_5300	0.59	+1.0
6,095,228	-		Pf6N2E2_5300	0.59	+1.0
6,095,228	-		Pf6N2E2_5300	0.59	+1.0
6,095,228	-		Pf6N2E2_5300	0.59	+1.0
6,095,231	+		Pf6N2E2_5300	0.59	+0.0
6,095,231	+		Pf6N2E2_5300	0.59	+1.0
6,095,231	+		Pf6N2E2_5300	0.59	+1.0
6,095,231	+		Pf6N2E2_5300	0.59	-1.0
6,095,231	+		Pf6N2E2_5300	0.59	+1.0
6,095,231	+		Pf6N2E2_5300	0.59	+1.0
6,095,231	+		Pf6N2E2_5300	0.59	+0.0
6,095,231	+		Pf6N2E2_5300	0.59	+0.7
6,095,232	-		Pf6N2E2_5300	0.60	-0.6
6,095,232	-		Pf6N2E2_5300	0.60	+0.0
6,095,232	-		Pf6N2E2_5300	0.60	-0.6
6,095,232	-		Pf6N2E2_5300	0.60	+0.0
6,095,232	-		Pf6N2E2_5300	0.60	-1.0
6,095,232	-		Pf6N2E2_5300	0.60	+0.0
6,095,232	-		Pf6N2E2_5300	0.60	-0.5
6,095,345	+		Pf6N2E2_5300	0.68	+0.0
6,095,347	+		Pf6N2E2_5300	0.68	-0.8
6,095,347	+		Pf6N2E2_5300	0.68	+1.0
6,095,347	+		Pf6N2E2_5300	0.68	+0.0
6,095,347	+		Pf6N2E2_5300	0.68	+0.0
6,095,347	+		Pf6N2E2_5300	0.68	-1.0
6,095,348	-		Pf6N2E2_5300	0.68	+1.0
6,095,348	-		Pf6N2E2_5300	0.68	+1.0
6,095,348	-		Pf6N2E2_5300	0.68	-1.0
6,095,348	-		Pf6N2E2_5300	0.68	+1.0
6,095,348	-		Pf6N2E2_5300	0.68	+1.0
6,095,348	-		Pf6N2E2_5300	0.68	-0.7
6,095,351	+		Pf6N2E2_5300	0.68	+1.0
6,095,351	+		Pf6N2E2_5300	0.68	+1.0
6,095,351	+		Pf6N2E2_5300	0.68	+1.0
6,095,352	-		Pf6N2E2_5300	0.68	+0.0
6,095,352	-		Pf6N2E2_5300	0.68	+0.0
6,095,558	+		Pf6N2E2_5300	0.83	+1.0
6,095,558	+		Pf6N2E2_5300	0.83	-0.9
6,095,564	+		Pf6N2E2_5300	0.83	+1.0
6,095,637	+		Pf6N2E2_5300	0.89	-0.3
6,095,694	+				-1.0
6,095,786	+				-0.6
6,095,786	+				+1.0
6,095,789	+				-0.8
6,095,792	+				+1.6
6,095,793	-				+1.0
6,095,793	-				+0.0
6,095,829	+				-0.8
6,095,829	+				+1.0
6,095,830	-				+0.0
6,095,830	-				+0.0
6,095,830	-				+1.0
6,095,830	-				+0.3
6,095,830	-				+1.0
6,095,866	+				-0.6
6,095,866	+				+1.0
6,095,871	-				+1.0
6,095,957	+		Pf6N2E2_5301	0.34	+0.0
6,095,957	+		Pf6N2E2_5301	0.34	-0.6
6,095,957	+		Pf6N2E2_5301	0.34	+0.0
6,095,958	-		Pf6N2E2_5301	0.34	-0.6
6,095,958	-		Pf6N2E2_5301	0.34	-1.3
6,095,958	-		Pf6N2E2_5301	0.34	-1.6
6,095,958	-		Pf6N2E2_5301	0.34	-1.0
6,095,958	-		Pf6N2E2_5301	0.34	+1.0
6,095,958	-		Pf6N2E2_5301	0.34	-1.2
6,096,025	+		Pf6N2E2_5301	0.60	+1.0
6,096,026	-		Pf6N2E2_5301	0.60	+0.0
6,096,026	-		Pf6N2E2_5301	0.60	+0.4
6,096,112	+				+1.0
6,096,112	+				+1.0
6,096,112	+				-1.0
6,096,112	+				-1.0
6,096,112	+				-0.4
6,096,113	-				+0.0
6,096,113	-				+0.0
6,096,113	-				-0.7
6,096,113	-				-1.7
6,096,113	-				+1.0
6,096,198	-				+1.0
6,096,231	+				-0.6
6,096,231	+				+1.0
6,096,232	-				+0.4
6,096,232	-				+0.4
6,096,236	+				-0.7
6,096,236	+				+0.0
6,096,430	+				+1.0
6,096,431	-				-0.4
6,096,431	-				-0.5
6,096,439	+				+1.0
6,096,439	+				+1.0
6,096,439	+				-0.7
6,096,439	+				-0.3
6,096,439	+				+1.0
6,096,439	+				+1.0
6,096,439	+				-0.2
6,096,439	+				+1.0
6,096,440	-				+0.0
6,096,440	-				+1.0
6,096,440	-				-1.8
6,096,440	-				+0.0
6,096,440	-				-0.0
6,096,676	+		Pf6N2E2_5302	0.46	+1.0
6,096,676	+		Pf6N2E2_5302	0.46	+0.0
6,096,676	+		Pf6N2E2_5302	0.46	+1.0
6,096,677	-		Pf6N2E2_5302	0.46	-0.6
6,096,677	-		Pf6N2E2_5302	0.46	-1.0
6,096,677	-		Pf6N2E2_5302	0.46	+1.0
6,096,677	-		Pf6N2E2_5302	0.46	-0.6
6,096,677	-		Pf6N2E2_5302	0.46	+0.0
6,096,715	+		Pf6N2E2_5302	0.54	-0.6
6,096,715	+		Pf6N2E2_5302	0.54	+1.0
6,096,715	+		Pf6N2E2_5302	0.54	+0.0
6,096,716	-		Pf6N2E2_5302	0.54	+1.0
6,096,716	-		Pf6N2E2_5302	0.54	+0.2
6,096,716	-		Pf6N2E2_5302	0.54	+1.0
6,096,716	-		Pf6N2E2_5302	0.54	-0.9
6,096,793	+		Pf6N2E2_5302	0.69	+1.0
6,096,793	+		Pf6N2E2_5302	0.69	-1.0
6,096,793	+		Pf6N2E2_5302	0.69	+1.0
6,096,793	+		Pf6N2E2_5302	0.69	-0.6
6,096,793	+		Pf6N2E2_5302	0.69	-0.6
6,096,794	-		Pf6N2E2_5302	0.70	+1.0
6,096,794	-		Pf6N2E2_5302	0.70	-0.4
6,096,794	-		Pf6N2E2_5302	0.70	+0.0
6,096,794	-		Pf6N2E2_5302	0.70	-0.6
6,096,794	-		Pf6N2E2_5302	0.70	+1.0
6,096,794	-		Pf6N2E2_5302	0.70	+1.0
6,096,794	-		Pf6N2E2_5302	0.70	+0.0
6,096,794	-		Pf6N2E2_5302	0.70	-1.0
6,096,794	-		Pf6N2E2_5302	0.70	-0.4
6,096,845	-		Pf6N2E2_5302	0.80	-0.6
6,096,943	+				+1.0
6,096,943	+				-0.6