Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5093 and Pf6N2E2_5094 are separated by 408 nucleotides Pf6N2E2_5094 and Pf6N2E2_5095 are separated by 132 nucleotides Pf6N2E2_5095 and Pf6N2E2_5096 are separated by 204 nucleotides Pf6N2E2_5096 and Pf6N2E2_5097 are separated by 134 nucleotides
Pf6N2E2_5093 - ATP-dependent protease La (EC 3.4.21.53) Type II, at 5,875,825 to 5,878,263
_5093
Pf6N2E2_5094 - FIG00956889: hypothetical protein, at 5,878,672 to 5,878,923
_5094
Pf6N2E2_5095 - Putative inner membrane protein (Fragment), at 5,879,056 to 5,879,544
_5095
Pf6N2E2_5096 - FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8), at 5,879,749 to 5,880,366
_5096
Pf6N2E2_5097 - FIG00953595: hypothetical protein, at 5,880,501 to 5,880,758
_5097
Position (kb) 5879
5880 Strain fitness (log2 ratio) -2
-1
0
1 at 5878.379 kb on - strand at 5878.393 kb on + strand at 5878.492 kb on + strand at 5878.565 kb on + strand at 5878.566 kb on - strand at 5878.566 kb on - strand at 5878.566 kb on - strand at 5878.665 kb on + strand at 5878.666 kb on - strand at 5878.671 kb on + strand at 5878.776 kb on + strand, within Pf6N2E2_5094 at 5878.807 kb on + strand, within Pf6N2E2_5094 at 5878.832 kb on + strand, within Pf6N2E2_5094 at 5878.832 kb on + strand, within Pf6N2E2_5094 at 5878.832 kb on + strand, within Pf6N2E2_5094 at 5878.832 kb on + strand, within Pf6N2E2_5094 at 5878.832 kb on + strand, within Pf6N2E2_5094 at 5878.832 kb on + strand, within Pf6N2E2_5094 at 5878.833 kb on - strand, within Pf6N2E2_5094 at 5878.833 kb on - strand, within Pf6N2E2_5094 at 5878.833 kb on - strand, within Pf6N2E2_5094 at 5878.833 kb on - strand, within Pf6N2E2_5094 at 5878.833 kb on - strand, within Pf6N2E2_5094 at 5878.833 kb on - strand, within Pf6N2E2_5094 at 5878.951 kb on + strand at 5878.952 kb on - strand at 5879.017 kb on + strand at 5879.017 kb on + strand at 5879.017 kb on + strand at 5879.017 kb on + strand at 5879.018 kb on - strand at 5879.018 kb on - strand at 5879.018 kb on - strand at 5879.018 kb on - strand at 5879.019 kb on + strand at 5879.019 kb on + strand at 5879.019 kb on + strand at 5879.019 kb on + strand at 5879.019 kb on + strand at 5879.019 kb on + strand at 5879.020 kb on - strand at 5879.020 kb on - strand at 5879.020 kb on - strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.083 kb on + strand at 5879.084 kb on - strand at 5879.084 kb on - strand at 5879.084 kb on - strand at 5879.084 kb on - strand at 5879.084 kb on - strand at 5879.084 kb on - strand at 5879.113 kb on + strand, within Pf6N2E2_5095 at 5879.470 kb on + strand, within Pf6N2E2_5095 at 5879.470 kb on + strand, within Pf6N2E2_5095 at 5879.470 kb on + strand, within Pf6N2E2_5095 at 5879.470 kb on + strand, within Pf6N2E2_5095 at 5879.471 kb on - strand, within Pf6N2E2_5095 at 5879.471 kb on - strand, within Pf6N2E2_5095 at 5879.471 kb on - strand, within Pf6N2E2_5095 at 5879.471 kb on - strand, within Pf6N2E2_5095 at 5879.579 kb on + strand at 5879.625 kb on + strand at 5879.626 kb on - strand at 5879.658 kb on + strand at 5879.658 kb on + strand at 5880.128 kb on - strand, within Pf6N2E2_5096 at 5880.169 kb on + strand, within Pf6N2E2_5096 at 5880.169 kb on + strand, within Pf6N2E2_5096 at 5880.169 kb on + strand, within Pf6N2E2_5096 at 5880.170 kb on - strand, within Pf6N2E2_5096 at 5880.170 kb on - strand, within Pf6N2E2_5096 at 5880.269 kb on - strand, within Pf6N2E2_5096 at 5880.269 kb on - strand, within Pf6N2E2_5096 at 5880.269 kb on - strand, within Pf6N2E2_5096 at 5880.290 kb on - strand, within Pf6N2E2_5096 at 5880.359 kb on + strand at 5880.359 kb on + strand at 5880.359 kb on + strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.360 kb on - strand at 5880.364 kb on + strand at 5880.364 kb on + strand at 5880.365 kb on - strand at 5880.365 kb on - strand at 5880.365 kb on - strand at 5880.365 kb on - strand at 5880.382 kb on + strand at 5880.383 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 5,878,379 - -0.5 5,878,393 + +1.0 5,878,492 + +0.0 5,878,565 + -0.2 5,878,566 - +0.0 5,878,566 - +1.0 5,878,566 - -0.3 5,878,665 + +1.0 5,878,666 - +0.0 5,878,671 + +0.8 5,878,776 + Pf6N2E2_5094 0.41 +1.0 5,878,807 + Pf6N2E2_5094 0.54 -0.5 5,878,832 + Pf6N2E2_5094 0.63 -0.5 5,878,832 + Pf6N2E2_5094 0.63 -0.7 5,878,832 + Pf6N2E2_5094 0.63 -0.3 5,878,832 + Pf6N2E2_5094 0.63 -0.3 5,878,832 + Pf6N2E2_5094 0.63 -1.3 5,878,832 + Pf6N2E2_5094 0.63 +1.0 5,878,833 - Pf6N2E2_5094 0.64 +1.0 5,878,833 - Pf6N2E2_5094 0.64 +0.0 5,878,833 - Pf6N2E2_5094 0.64 -1.5 5,878,833 - Pf6N2E2_5094 0.64 +1.0 5,878,833 - Pf6N2E2_5094 0.64 +1.0 5,878,833 - Pf6N2E2_5094 0.64 +1.0 5,878,951 + +0.0 5,878,952 - -2.0 5,879,017 + -0.5 5,879,017 + +1.0 5,879,017 + -0.5 5,879,017 + +0.0 5,879,018 - -0.5 5,879,018 - -1.0 5,879,018 - +1.0 5,879,018 - -0.5 5,879,019 + +1.0 5,879,019 + +1.0 5,879,019 + +0.0 5,879,019 + -0.1 5,879,019 + -0.5 5,879,019 + +0.0 5,879,020 - +0.0 5,879,020 - +1.0 5,879,020 - +1.0 5,879,083 + +1.0 5,879,083 + +0.0 5,879,083 + +0.0 5,879,083 + +1.0 5,879,083 + -0.5 5,879,083 + +0.0 5,879,083 + -0.5 5,879,083 + +1.0 5,879,084 - +0.0 5,879,084 - +1.0 5,879,084 - -0.7 5,879,084 - -0.5 5,879,084 - +0.2 5,879,084 - +1.0 5,879,113 + Pf6N2E2_5095 0.12 +1.0 5,879,470 + Pf6N2E2_5095 0.85 -0.5 5,879,470 + Pf6N2E2_5095 0.85 +0.0 5,879,470 + Pf6N2E2_5095 0.85 +0.0 5,879,470 + Pf6N2E2_5095 0.85 +0.0 5,879,471 - Pf6N2E2_5095 0.85 +1.0 5,879,471 - Pf6N2E2_5095 0.85 -2.3 5,879,471 - Pf6N2E2_5095 0.85 +1.0 5,879,471 - Pf6N2E2_5095 0.85 +0.0 5,879,579 + +0.0 5,879,625 + +0.6 5,879,626 - -0.7 5,879,658 + +1.0 5,879,658 + +1.0 5,880,128 - Pf6N2E2_5096 0.61 -0.5 5,880,169 + Pf6N2E2_5096 0.68 +1.0 5,880,169 + Pf6N2E2_5096 0.68 -0.5 5,880,169 + Pf6N2E2_5096 0.68 -0.7 5,880,170 - Pf6N2E2_5096 0.68 +1.0 5,880,170 - Pf6N2E2_5096 0.68 +1.0 5,880,269 - Pf6N2E2_5096 0.84 +1.0 5,880,269 - Pf6N2E2_5096 0.84 +0.0 5,880,269 - Pf6N2E2_5096 0.84 +0.0 5,880,290 - Pf6N2E2_5096 0.88 +0.0 5,880,359 + -1.7 5,880,359 + +1.0 5,880,359 + -0.7 5,880,360 - +1.0 5,880,360 - +1.0 5,880,360 - +1.0 5,880,360 - -1.3 5,880,360 - +0.0 5,880,360 - +1.0 5,880,360 - +1.0 5,880,360 - +1.0 5,880,364 + -1.3 5,880,364 + -1.7 5,880,365 - +1.0 5,880,365 - +1.0 5,880,365 - +0.0 5,880,365 - +0.0 5,880,382 + -1.3 5,880,383 - +0.0
Or see this region's nucleotide sequence