Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4560

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
5,288,372	+		Pf6N2E2_4559	0.58	+1.1
5,288,372	+		Pf6N2E2_4559	0.58	-0.2
5,288,373	-		Pf6N2E2_4559	0.58	+0.1
5,288,552	+		Pf6N2E2_4559	0.71	+1.1
5,288,552	+		Pf6N2E2_4559	0.71	+1.1
5,288,553	-		Pf6N2E2_4559	0.71	-0.5
5,288,553	-		Pf6N2E2_4559	0.71	+0.1
5,288,553	-		Pf6N2E2_4559	0.71	+0.1
5,288,588	+		Pf6N2E2_4559	0.74	+0.2
5,288,588	+		Pf6N2E2_4559	0.74	+1.1
5,288,588	+		Pf6N2E2_4559	0.74	-0.2
5,288,588	+		Pf6N2E2_4559	0.74	+0.4
5,288,589	-		Pf6N2E2_4559	0.74	-0.3
5,288,774	+		Pf6N2E2_4559	0.87	+1.1
5,288,774	+		Pf6N2E2_4559	0.87	+1.1
5,288,774	+		Pf6N2E2_4559	0.87	+1.1
5,288,775	-		Pf6N2E2_4559	0.87	+0.4
5,288,775	-		Pf6N2E2_4559	0.87	-0.1
5,288,775	-		Pf6N2E2_4559	0.87	-0.3
5,288,883	+				+1.1
5,288,883	+				+1.1
5,289,435	+		Pf6N2E2_4560	0.35	+0.1
5,289,531	+		Pf6N2E2_4560	0.42	+0.1
5,289,531	+		Pf6N2E2_4560	0.42	+0.8
5,289,532	-		Pf6N2E2_4560	0.42	+1.1
5,289,532	-		Pf6N2E2_4560	0.42	+0.1
5,289,706	+		Pf6N2E2_4560	0.55	+0.1
5,289,755	+		Pf6N2E2_4560	0.59	+0.5
5,289,755	+		Pf6N2E2_4560	0.59	+1.1
5,290,202	+				+1.1
5,290,280	+				-0.1
5,290,310	+				+0.1
5,290,310	+				+0.1
5,290,353	-				-0.7
5,290,392	+				+0.1
5,290,926	+				+0.1
5,290,926	+				+0.1
5,290,926	+				-1.0
5,290,926	+				+0.1
5,290,926	+				-0.5
5,290,926	+				+0.1
5,290,927	-				-1.2
5,290,927	-				-0.2
5,290,927	-				+3.4
5,290,927	-				+0.1
5,290,927	-				+0.1
5,291,071	+				+1.1