Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4557 and Pf6N2E2_4558 are separated by 2 nucleotides Pf6N2E2_4558 and Pf6N2E2_4559 are separated by 171 nucleotides Pf6N2E2_4559 and Pf6N2E2_4560 are separated by 4 nucleotides
Pf6N2E2_4557 - oxidoreductase, 2OG-Fe(II) oxygenase family, at 5,286,287 to 5,286,919
_4557
Pf6N2E2_4558 - Purine nucleoside phosphorylase (EC 2.4.2.1), at 5,286,922 to 5,287,413
_4558
Pf6N2E2_4559 - probable integral membrane protein NMA1898, at 5,287,585 to 5,288,946
_4559
Pf6N2E2_4560 - probable integral membrane protein NMA1899, at 5,288,951 to 5,290,318
_4560
Position (kb) 5287
5288
5289 Strain fitness (log2 ratio) -1
0
1 at 5286.657 kb on - strand, within Pf6N2E2_4557 at 5286.657 kb on - strand, within Pf6N2E2_4557 at 5286.716 kb on + strand, within Pf6N2E2_4557 at 5286.716 kb on + strand, within Pf6N2E2_4557 at 5286.717 kb on - strand, within Pf6N2E2_4557 at 5286.717 kb on - strand, within Pf6N2E2_4557 at 5286.717 kb on - strand, within Pf6N2E2_4557 at 5286.717 kb on - strand, within Pf6N2E2_4557 at 5286.717 kb on - strand, within Pf6N2E2_4557 at 5286.764 kb on + strand, within Pf6N2E2_4557 at 5286.764 kb on + strand, within Pf6N2E2_4557 at 5286.764 kb on + strand, within Pf6N2E2_4557 at 5286.764 kb on + strand, within Pf6N2E2_4557 at 5286.765 kb on - strand, within Pf6N2E2_4557 at 5286.765 kb on - strand, within Pf6N2E2_4557 at 5286.765 kb on - strand, within Pf6N2E2_4557 at 5287.273 kb on + strand, within Pf6N2E2_4558 at 5287.273 kb on + strand, within Pf6N2E2_4558 at 5287.273 kb on + strand, within Pf6N2E2_4558 at 5287.273 kb on + strand, within Pf6N2E2_4558 at 5287.273 kb on + strand, within Pf6N2E2_4558 at 5287.274 kb on - strand, within Pf6N2E2_4558 at 5287.274 kb on - strand, within Pf6N2E2_4558 at 5287.274 kb on - strand, within Pf6N2E2_4558 at 5287.468 kb on - strand at 5287.887 kb on - strand, within Pf6N2E2_4559 at 5287.887 kb on - strand, within Pf6N2E2_4559 at 5287.887 kb on - strand, within Pf6N2E2_4559 at 5287.887 kb on - strand, within Pf6N2E2_4559 at 5288.372 kb on + strand, within Pf6N2E2_4559 at 5288.372 kb on + strand, within Pf6N2E2_4559 at 5288.373 kb on - strand, within Pf6N2E2_4559 at 5288.552 kb on + strand, within Pf6N2E2_4559 at 5288.552 kb on + strand, within Pf6N2E2_4559 at 5288.553 kb on - strand, within Pf6N2E2_4559 at 5288.553 kb on - strand, within Pf6N2E2_4559 at 5288.553 kb on - strand, within Pf6N2E2_4559 at 5288.588 kb on + strand, within Pf6N2E2_4559 at 5288.588 kb on + strand, within Pf6N2E2_4559 at 5288.588 kb on + strand, within Pf6N2E2_4559 at 5288.588 kb on + strand, within Pf6N2E2_4559 at 5288.589 kb on - strand, within Pf6N2E2_4559 at 5288.774 kb on + strand, within Pf6N2E2_4559 at 5288.774 kb on + strand, within Pf6N2E2_4559 at 5288.774 kb on + strand, within Pf6N2E2_4559 at 5288.775 kb on - strand, within Pf6N2E2_4559 at 5288.775 kb on - strand, within Pf6N2E2_4559 at 5288.775 kb on - strand, within Pf6N2E2_4559 at 5288.883 kb on + strand at 5288.883 kb on + strand at 5289.435 kb on + strand, within Pf6N2E2_4560 at 5289.531 kb on + strand, within Pf6N2E2_4560 at 5289.531 kb on + strand, within Pf6N2E2_4560 at 5289.532 kb on - strand, within Pf6N2E2_4560 at 5289.532 kb on - strand, within Pf6N2E2_4560 at 5289.706 kb on + strand, within Pf6N2E2_4560 at 5289.755 kb on + strand, within Pf6N2E2_4560 at 5289.755 kb on + strand, within Pf6N2E2_4560
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 5,286,657 - Pf6N2E2_4557 0.58 +1.1 5,286,657 - Pf6N2E2_4557 0.58 +1.1 5,286,716 + Pf6N2E2_4557 0.68 +0.1 5,286,716 + Pf6N2E2_4557 0.68 +0.1 5,286,717 - Pf6N2E2_4557 0.68 +0.1 5,286,717 - Pf6N2E2_4557 0.68 +0.1 5,286,717 - Pf6N2E2_4557 0.68 +0.1 5,286,717 - Pf6N2E2_4557 0.68 -0.9 5,286,717 - Pf6N2E2_4557 0.68 -0.6 5,286,764 + Pf6N2E2_4557 0.75 +1.1 5,286,764 + Pf6N2E2_4557 0.75 +0.1 5,286,764 + Pf6N2E2_4557 0.75 -0.7 5,286,764 + Pf6N2E2_4557 0.75 -0.3 5,286,765 - Pf6N2E2_4557 0.76 -0.5 5,286,765 - Pf6N2E2_4557 0.76 -0.5 5,286,765 - Pf6N2E2_4557 0.76 +0.1 5,287,273 + Pf6N2E2_4558 0.71 -0.5 5,287,273 + Pf6N2E2_4558 0.71 +0.1 5,287,273 + Pf6N2E2_4558 0.71 +1.1 5,287,273 + Pf6N2E2_4558 0.71 +1.1 5,287,273 + Pf6N2E2_4558 0.71 +1.1 5,287,274 - Pf6N2E2_4558 0.72 -0.9 5,287,274 - Pf6N2E2_4558 0.72 +1.1 5,287,274 - Pf6N2E2_4558 0.72 -0.5 5,287,468 - +0.1 5,287,887 - Pf6N2E2_4559 0.22 -0.6 5,287,887 - Pf6N2E2_4559 0.22 -0.5 5,287,887 - Pf6N2E2_4559 0.22 +0.3 5,287,887 - Pf6N2E2_4559 0.22 +1.1 5,288,372 + Pf6N2E2_4559 0.58 +1.1 5,288,372 + Pf6N2E2_4559 0.58 -0.2 5,288,373 - Pf6N2E2_4559 0.58 +0.1 5,288,552 + Pf6N2E2_4559 0.71 +1.1 5,288,552 + Pf6N2E2_4559 0.71 +1.1 5,288,553 - Pf6N2E2_4559 0.71 -0.5 5,288,553 - Pf6N2E2_4559 0.71 +0.1 5,288,553 - Pf6N2E2_4559 0.71 +0.1 5,288,588 + Pf6N2E2_4559 0.74 +0.2 5,288,588 + Pf6N2E2_4559 0.74 +1.1 5,288,588 + Pf6N2E2_4559 0.74 -0.2 5,288,588 + Pf6N2E2_4559 0.74 +0.4 5,288,589 - Pf6N2E2_4559 0.74 -0.3 5,288,774 + Pf6N2E2_4559 0.87 +1.1 5,288,774 + Pf6N2E2_4559 0.87 +1.1 5,288,774 + Pf6N2E2_4559 0.87 +1.1 5,288,775 - Pf6N2E2_4559 0.87 +0.4 5,288,775 - Pf6N2E2_4559 0.87 -0.1 5,288,775 - Pf6N2E2_4559 0.87 -0.3 5,288,883 + +1.1 5,288,883 + +1.1 5,289,435 + Pf6N2E2_4560 0.35 +0.1 5,289,531 + Pf6N2E2_4560 0.42 +0.1 5,289,531 + Pf6N2E2_4560 0.42 +0.8 5,289,532 - Pf6N2E2_4560 0.42 +1.1 5,289,532 - Pf6N2E2_4560 0.42 +0.1 5,289,706 + Pf6N2E2_4560 0.55 +0.1 5,289,755 + Pf6N2E2_4560 0.59 +0.5 5,289,755 + Pf6N2E2_4560 0.59 +1.1
Or see this region's nucleotide sequence