Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4488

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
5,220,438	+		Pf6N2E2_4487	0.27	+0.1
5,220,438	+		Pf6N2E2_4487	0.27	-0.5
5,220,438	+		Pf6N2E2_4487	0.27	+0.1
5,220,438	+		Pf6N2E2_4487	0.27	+0.1
5,220,438	+		Pf6N2E2_4487	0.27	-0.5
5,220,438	+		Pf6N2E2_4487	0.27	+1.1
5,220,439	-		Pf6N2E2_4487	0.27	-0.6
5,220,439	-		Pf6N2E2_4487	0.27	-0.9
5,220,439	-		Pf6N2E2_4487	0.27	+0.1
5,220,439	-		Pf6N2E2_4487	0.27	+0.8
5,220,440	+		Pf6N2E2_4487	0.27	-1.7
5,220,440	+		Pf6N2E2_4487	0.27	-1.0
5,220,441	-		Pf6N2E2_4487	0.27	-0.9
5,220,441	-		Pf6N2E2_4487	0.27	-0.5
5,220,528	+		Pf6N2E2_4487	0.35	-1.7
5,220,528	+		Pf6N2E2_4487	0.35	+1.1
5,220,528	+		Pf6N2E2_4487	0.35	-0.9
5,220,528	+		Pf6N2E2_4487	0.35	+0.1
5,220,529	-		Pf6N2E2_4487	0.35	-0.5
5,220,529	-		Pf6N2E2_4487	0.35	-1.7
5,220,529	-		Pf6N2E2_4487	0.35	+0.2
5,220,532	+		Pf6N2E2_4487	0.36	+1.1
5,220,532	+		Pf6N2E2_4487	0.36	-0.8
5,220,533	-		Pf6N2E2_4487	0.36	+1.1
5,220,555	+		Pf6N2E2_4487	0.38	+0.1
5,220,555	+		Pf6N2E2_4487	0.38	+1.1
5,220,556	-		Pf6N2E2_4487	0.38	-0.5
5,220,556	-		Pf6N2E2_4487	0.38	+1.1
5,220,556	-		Pf6N2E2_4487	0.38	+1.1
5,220,557	+		Pf6N2E2_4487	0.38	+1.1
5,220,557	+		Pf6N2E2_4487	0.38	+0.1
5,220,557	+		Pf6N2E2_4487	0.38	-0.4
5,220,558	-		Pf6N2E2_4487	0.38	+1.1
5,220,633	+		Pf6N2E2_4487	0.45	+0.1
5,220,633	+		Pf6N2E2_4487	0.45	+1.1
5,220,633	+		Pf6N2E2_4487	0.45	+0.1
5,220,633	+		Pf6N2E2_4487	0.45	+0.1
5,220,634	-		Pf6N2E2_4487	0.45	-0.0
5,220,634	-		Pf6N2E2_4487	0.45	+1.1
5,220,634	-		Pf6N2E2_4487	0.45	+1.1
5,220,653	+		Pf6N2E2_4487	0.47	-0.3
5,220,654	-		Pf6N2E2_4487	0.47	-0.7
5,220,656	+		Pf6N2E2_4487	0.47	-2.3
5,220,656	+		Pf6N2E2_4487	0.47	+0.1
5,220,657	-		Pf6N2E2_4487	0.47	+0.1
5,220,668	+		Pf6N2E2_4487	0.48	+0.1
5,220,686	-		Pf6N2E2_4487	0.50	+0.1
5,220,698	+		Pf6N2E2_4487	0.51	+1.1
5,220,707	+		Pf6N2E2_4487	0.52	-0.8
5,220,708	-		Pf6N2E2_4487	0.52	+0.1
5,220,708	-		Pf6N2E2_4487	0.52	+1.1
5,220,711	+		Pf6N2E2_4487	0.52	-1.2
5,220,719	+		Pf6N2E2_4487	0.53	-0.5
5,220,738	+		Pf6N2E2_4487	0.54	+0.1
5,220,741	+		Pf6N2E2_4487	0.55	+1.1
5,220,743	+		Pf6N2E2_4487	0.55	+0.1
5,220,792	-		Pf6N2E2_4487	0.59	-0.8
5,220,795	+		Pf6N2E2_4487	0.60	+0.1
5,221,008	+		Pf6N2E2_4487	0.79	-0.9
5,221,009	-		Pf6N2E2_4487	0.79	+0.1
5,221,009	-		Pf6N2E2_4487	0.79	+1.1
5,221,009	-		Pf6N2E2_4487	0.79	+2.7
5,221,060	-		Pf6N2E2_4487	0.84	-0.1
5,221,069	-		Pf6N2E2_4487	0.85	-2.0
5,221,069	-		Pf6N2E2_4487	0.85	+1.1
5,221,094	+		Pf6N2E2_4487	0.87	+0.6
5,221,159	+				+0.3
5,221,159	+				+1.1
5,221,160	-				+0.4
5,221,172	+				-0.6
5,221,226	-				+1.1
5,221,354	-				-1.2
5,221,460	-		Pf6N2E2_4488	0.13	+0.1
5,221,626	+		Pf6N2E2_4488	0.77	-0.9
5,221,626	+		Pf6N2E2_4488	0.77	+1.1
5,221,627	-		Pf6N2E2_4488	0.78	+0.5
5,221,627	-		Pf6N2E2_4488	0.78	+1.1
5,221,627	-		Pf6N2E2_4488	0.78	-2.3
5,221,627	-		Pf6N2E2_4488	0.78	+1.7
5,221,715	+				+1.1
5,221,747	+				+1.1
5,221,747	+				-0.5
5,221,747	+				-0.6
5,221,747	+				+1.1
5,221,747	+				+0.1
5,221,747	+				+0.1
5,221,747	+				+0.1
5,221,747	+				+1.1
5,221,747	+				+1.1
5,221,747	+				-0.5
5,221,748	-				-1.3
5,221,748	-				-1.9
5,221,748	-				-0.5
5,221,748	-				-0.9
5,221,748	-				+1.1
5,221,769	+				+0.1
5,221,769	+				-0.5
5,221,769	+				-0.9
5,221,769	+				-0.5
5,221,769	+				-0.5
5,221,769	+				-0.8
5,221,769	+				+1.1
5,221,769	+				+1.1
5,221,770	-				-0.9
5,221,770	-				-0.2
5,221,770	-				-0.5
5,221,770	-				+1.1
5,221,770	-				+1.1
5,221,770	-				+0.0
5,221,770	-				-1.5
5,221,794	+				+1.1
5,221,795	-				-1.0
5,221,795	-				-1.0
5,221,795	-				-0.7
5,222,051	+		Pf6N2E2_4489	0.53	+0.1
5,222,051	+		Pf6N2E2_4489	0.53	+0.1
5,222,052	-		Pf6N2E2_4489	0.53	-1.1
5,222,052	-		Pf6N2E2_4489	0.53	+1.1
5,222,052	-		Pf6N2E2_4489	0.53	-0.2
5,222,052	-		Pf6N2E2_4489	0.53	+0.1
5,222,052	-		Pf6N2E2_4489	0.53	+1.1
5,222,052	-		Pf6N2E2_4489	0.53	-0.8
5,222,172	-		Pf6N2E2_4489	0.80	+1.1
5,222,262	+				+1.1
5,222,262	+				+1.1
5,222,262	+				-0.6
5,222,262	+				+1.1
5,222,262	+				-0.5
5,222,262	+				+0.7
5,222,263	-				-0.1
5,222,263	-				+0.4
5,222,263	-				-0.9
5,222,263	-				-0.3
5,222,263	-				-0.5
5,222,411	+		Pf6N2E2_4490	0.15	+0.1
5,222,412	-		Pf6N2E2_4490	0.15	+1.1
5,222,412	-		Pf6N2E2_4490	0.15	-2.1
5,222,412	-		Pf6N2E2_4490	0.15	+1.1
5,222,412	-		Pf6N2E2_4490	0.15	+0.1
5,222,412	-		Pf6N2E2_4490	0.15	+0.1
5,222,429	+		Pf6N2E2_4490	0.17	-0.3
5,222,429	+		Pf6N2E2_4490	0.17	+0.1
5,222,430	-		Pf6N2E2_4490	0.17	+0.1
5,222,430	-		Pf6N2E2_4490	0.17	-0.2
5,222,646	+		Pf6N2E2_4490	0.41	+1.1
5,222,646	+		Pf6N2E2_4490	0.41	+0.1
5,222,647	-		Pf6N2E2_4490	0.41	+1.1
5,222,647	-		Pf6N2E2_4490	0.41	-0.4