Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4407

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
5,140,170	-		Pf6N2E2_4406	0.42	-0.6
5,140,170	-		Pf6N2E2_4406	0.42	+0.1
5,140,238	-		Pf6N2E2_4406	0.46	-0.0
5,140,238	-		Pf6N2E2_4406	0.46	-0.3
5,140,238	-		Pf6N2E2_4406	0.46	-0.5
5,140,255	+		Pf6N2E2_4406	0.47	-0.3
5,140,255	-		Pf6N2E2_4406	0.47	-0.0
5,140,297	+		Pf6N2E2_4406	0.50	-0.5
5,140,297	+		Pf6N2E2_4406	0.50	+0.1
5,140,298	-		Pf6N2E2_4406	0.50	+0.1
5,140,298	-		Pf6N2E2_4406	0.50	-0.7
5,140,394	+		Pf6N2E2_4406	0.56	+0.1
5,140,394	+		Pf6N2E2_4406	0.56	+1.1
5,140,395	-		Pf6N2E2_4406	0.56	+0.1
5,140,411	+				+1.4
5,140,411	+		Pf6N2E2_4406	0.57	-0.9
5,140,412	-		Pf6N2E2_4406	0.57	-0.6
5,140,412	-		Pf6N2E2_4406	0.57	+0.1
5,140,519	+		Pf6N2E2_4406	0.64	+0.7
5,140,561	+		Pf6N2E2_4406	0.66	+1.1
5,140,561	+		Pf6N2E2_4406	0.66	-0.7
5,140,561	+		Pf6N2E2_4406	0.66	+0.1
5,140,561	+		Pf6N2E2_4406	0.66	+1.1
5,140,561	+		Pf6N2E2_4406	0.66	+1.1
5,140,561	+		Pf6N2E2_4406	0.66	-1.2
5,140,562	-		Pf6N2E2_4406	0.66	+1.1
5,140,562	-		Pf6N2E2_4406	0.66	-0.3
5,140,562	-		Pf6N2E2_4406	0.66	-0.5
5,140,562	-		Pf6N2E2_4406	0.66	-0.9
5,140,562	-		Pf6N2E2_4406	0.66	-0.4
5,140,562	-		Pf6N2E2_4406	0.66	+1.1
5,140,610	-		Pf6N2E2_4406	0.69	+1.1
5,140,685	-		Pf6N2E2_4406	0.74	-0.5
5,140,685	-		Pf6N2E2_4406	0.74	+1.1
5,140,685	-		Pf6N2E2_4406	0.74	-0.6
5,140,705	+		Pf6N2E2_4406	0.75	+1.1
5,140,705	+		Pf6N2E2_4406	0.75	-0.9
5,140,705	+		Pf6N2E2_4406	0.75	+0.1
5,140,705	+		Pf6N2E2_4406	0.75	-0.3
5,140,705	+		Pf6N2E2_4406	0.75	+0.1
5,140,706	-		Pf6N2E2_4406	0.75	-0.9
5,140,706	-		Pf6N2E2_4406	0.75	-0.3
5,140,823	-		Pf6N2E2_4406	0.82	-0.5
5,140,834	+		Pf6N2E2_4406	0.83	+1.1
5,140,834	+		Pf6N2E2_4406	0.83	+0.1
5,140,835	-				-0.5
5,140,861	+		Pf6N2E2_4406	0.84	-0.3
5,140,870	+		Pf6N2E2_4406	0.85	-2.3
5,140,870	+		Pf6N2E2_4406	0.85	-0.5
5,140,870	+		Pf6N2E2_4406	0.85	+0.1
5,140,870	+		Pf6N2E2_4406	0.85	+0.1
5,140,871	-		Pf6N2E2_4406	0.85	-0.1
5,140,871	-		Pf6N2E2_4406	0.85	+1.1
5,140,871	-		Pf6N2E2_4406	0.85	+0.1
5,140,871	-		Pf6N2E2_4406	0.85	+0.1
5,141,098	+				-0.5
5,141,098	+				+1.1
5,141,098	+				-0.5
5,141,098	+				-1.2
5,141,099	-				+0.1
5,141,099	-				-0.5
5,141,099	-				-0.2
5,141,114	+				-0.5
5,141,114	+				+1.0
5,141,115	-				+0.1
5,141,115	-				+0.1
5,141,115	-				-0.6
5,141,115	-				+0.1
5,141,172	+		Pf6N2E2_4407	0.11	+1.1
5,141,172	+		Pf6N2E2_4407	0.11	+0.1
5,141,172	+		Pf6N2E2_4407	0.11	+0.1
5,141,208	+		Pf6N2E2_4407	0.18	-0.5
5,141,208	+		Pf6N2E2_4407	0.18	+0.1
5,141,209	-		Pf6N2E2_4407	0.18	-0.3
5,141,209	-		Pf6N2E2_4407	0.18	+0.0
5,141,272	-		Pf6N2E2_4407	0.29	-0.9
5,141,272	-		Pf6N2E2_4407	0.29	+1.1
5,141,337	+		Pf6N2E2_4407	0.41	+1.1
5,141,337	+		Pf6N2E2_4407	0.41	+1.8
5,141,337	+		Pf6N2E2_4407	0.41	+0.1
5,141,338	-		Pf6N2E2_4407	0.41	+1.1
5,141,338	-		Pf6N2E2_4407	0.41	+0.1
5,141,433	+		Pf6N2E2_4407	0.59	+0.1
5,141,437	-		Pf6N2E2_4407	0.59	+1.1
5,141,612	-				-0.1
5,141,700	+				+1.1
5,141,700	+				+0.1
5,141,701	-				+0.1
5,141,701	-				+1.1
5,141,751	+				+1.1
5,141,751	+				+1.1
5,141,795	+				-0.9
5,141,796	-				-0.9
5,141,856	+		Pf6N2E2_4408	0.14	+1.1
5,141,856	+		Pf6N2E2_4408	0.14	+0.1
5,141,856	+		Pf6N2E2_4408	0.14	+0.1
5,141,856	+		Pf6N2E2_4408	0.14	-0.5
5,141,856	+		Pf6N2E2_4408	0.14	+0.1
5,141,857	-		Pf6N2E2_4408	0.14	-0.5
5,141,857	-		Pf6N2E2_4408	0.14	-1.1
5,141,857	-		Pf6N2E2_4408	0.14	+0.1
5,141,857	-		Pf6N2E2_4408	0.14	+1.1
5,141,857	-		Pf6N2E2_4408	0.14	+1.1
5,141,857	-		Pf6N2E2_4408	0.14	+1.1
5,141,857	-		Pf6N2E2_4408	0.14	+1.1
5,141,857	-		Pf6N2E2_4408	0.14	+0.1
5,141,857	-		Pf6N2E2_4408	0.14	+0.1
5,141,857	-		Pf6N2E2_4408	0.14	-1.7
5,141,857	-		Pf6N2E2_4408	0.14	-2.3
5,141,857	-		Pf6N2E2_4408	0.14	+0.1
5,141,857	-		Pf6N2E2_4408	0.14	+0.9
5,141,857	-		Pf6N2E2_4408	0.14	+0.1
5,141,967	+		Pf6N2E2_4408	0.21	+1.1
5,141,968	-		Pf6N2E2_4408	0.21	-0.9
5,142,247	-		Pf6N2E2_4408	0.41	+1.1
5,142,247	-		Pf6N2E2_4408	0.41	+1.1
5,142,247	-		Pf6N2E2_4408	0.41	-0.5
5,142,394	-		Pf6N2E2_4408	0.51	-0.5
5,142,501	+		Pf6N2E2_4408	0.59	+0.1
5,142,502	-		Pf6N2E2_4408	0.59	+1.1
5,142,502	-		Pf6N2E2_4408	0.59	+1.1
5,142,502	-		Pf6N2E2_4408	0.59	+0.5