Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4317

Experiment: Ying_OrganicAcid7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4315 and Pf6N2E2_4316 are separated by 84 nucleotidesPf6N2E2_4316 and Pf6N2E2_4317 are separated by 63 nucleotidesPf6N2E2_4317 and Pf6N2E2_4318 are separated by 18 nucleotides Pf6N2E2_4315 - Rhs-family protein, at 5,033,634 to 5,038,031 _4315 Pf6N2E2_4316 - hypothetical protein, at 5,038,116 to 5,038,466 _4316 Pf6N2E2_4317 - FIG00964469: hypothetical protein, at 5,038,530 to 5,038,964 _4317 Pf6N2E2_4318 - VgrG-3 protein, at 5,038,983 to 5,040,914 _4318 Position (kb) 5038 5039Strain fitness (log2 ratio) -2 -1 0 1at 5037.595 kb on + strandat 5037.774 kb on + strandat 5037.775 kb on - strandat 5037.951 kb on + strandat 5037.952 kb on - strandat 5037.952 kb on - strandat 5038.131 kb on + strandat 5038.132 kb on - strandat 5038.250 kb on + strand, within Pf6N2E2_4316at 5038.251 kb on - strand, within Pf6N2E2_4316at 5038.256 kb on - strand, within Pf6N2E2_4316at 5038.305 kb on - strand, within Pf6N2E2_4316at 5038.305 kb on - strand, within Pf6N2E2_4316at 5038.324 kb on + strand, within Pf6N2E2_4316at 5038.324 kb on + strand, within Pf6N2E2_4316at 5038.325 kb on - strand, within Pf6N2E2_4316at 5038.325 kb on - strand, within Pf6N2E2_4316at 5038.325 kb on - strand, within Pf6N2E2_4316at 5038.336 kb on + strand, within Pf6N2E2_4316at 5038.336 kb on + strand, within Pf6N2E2_4316at 5038.336 kb on + strand, within Pf6N2E2_4316at 5038.336 kb on + strand, within Pf6N2E2_4316at 5038.336 kb on + strand, within Pf6N2E2_4316at 5038.336 kb on + strand, within Pf6N2E2_4316at 5038.336 kb on + strand, within Pf6N2E2_4316at 5038.336 kb on + strand, within Pf6N2E2_4316at 5038.337 kb on - strand, within Pf6N2E2_4316at 5038.337 kb on - strand, within Pf6N2E2_4316at 5038.337 kb on - strand, within Pf6N2E2_4316at 5038.337 kb on - strand, within Pf6N2E2_4316at 5038.337 kb on - strand, within Pf6N2E2_4316at 5038.337 kb on - strand, within Pf6N2E2_4316at 5038.344 kb on + strand, within Pf6N2E2_4316at 5038.344 kb on + strand, within Pf6N2E2_4316at 5038.344 kb on + strand, within Pf6N2E2_4316at 5038.345 kb on - strand, within Pf6N2E2_4316at 5038.345 kb on - strand, within Pf6N2E2_4316at 5038.375 kb on + strand, within Pf6N2E2_4316at 5038.376 kb on - strand, within Pf6N2E2_4316at 5038.376 kb on - strand, within Pf6N2E2_4316at 5038.376 kb on - strand, within Pf6N2E2_4316at 5038.376 kb on - strand, within Pf6N2E2_4316at 5038.376 kb on - strand, within Pf6N2E2_4316at 5038.376 kb on - strand, within Pf6N2E2_4316at 5038.376 kb on - strand, within Pf6N2E2_4316at 5038.438 kb on + strandat 5038.438 kb on + strandat 5038.439 kb on - strandat 5038.439 kb on - strandat 5038.615 kb on + strand, within Pf6N2E2_4317at 5038.615 kb on + strand, within Pf6N2E2_4317at 5038.615 kb on + strand, within Pf6N2E2_4317at 5038.615 kb on + strand, within Pf6N2E2_4317at 5038.666 kb on + strand, within Pf6N2E2_4317at 5038.958 kb on - strandat 5038.985 kb on - strandat 5039.122 kb on + strandat 5039.227 kb on + strand, within Pf6N2E2_4318at 5039.227 kb on + strand, within Pf6N2E2_4318at 5039.227 kb on + strand, within Pf6N2E2_4318at 5039.227 kb on + strand, within Pf6N2E2_4318at 5039.228 kb on - strand, within Pf6N2E2_4318at 5039.228 kb on - strand, within Pf6N2E2_4318at 5039.228 kb on - strand, within Pf6N2E2_4318at 5039.557 kb on + strand, within Pf6N2E2_4318at 5039.557 kb on + strand, within Pf6N2E2_4318at 5039.557 kb on + strand, within Pf6N2E2_4318at 5039.557 kb on + strand, within Pf6N2E2_4318at 5039.729 kb on - strand, within Pf6N2E2_4318at 5039.939 kb on - strand, within Pf6N2E2_4318at 5039.939 kb on - strand, within Pf6N2E2_4318

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2
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5,037,595 + +1.1
5,037,774 + -0.3
5,037,775 - +1.1
5,037,951 + +0.1
5,037,952 - -0.5
5,037,952 - +0.2
5,038,131 + -0.9
5,038,132 - -2.0
5,038,250 + Pf6N2E2_4316 0.38 +0.1
5,038,251 - Pf6N2E2_4316 0.38 +0.5
5,038,256 - Pf6N2E2_4316 0.40 +0.1
5,038,305 - Pf6N2E2_4316 0.54 -0.3
5,038,305 - Pf6N2E2_4316 0.54 -1.3
5,038,324 + Pf6N2E2_4316 0.59 +1.1
5,038,324 + Pf6N2E2_4316 0.59 +1.1
5,038,325 - Pf6N2E2_4316 0.60 -1.0
5,038,325 - Pf6N2E2_4316 0.60 +1.1
5,038,325 - Pf6N2E2_4316 0.60 +1.1
5,038,336 + Pf6N2E2_4316 0.63 +1.1
5,038,336 + Pf6N2E2_4316 0.63 +1.1
5,038,336 + Pf6N2E2_4316 0.63 -0.9
5,038,336 + Pf6N2E2_4316 0.63 +0.1
5,038,336 + Pf6N2E2_4316 0.63 +1.1
5,038,336 + Pf6N2E2_4316 0.63 +1.1
5,038,336 + Pf6N2E2_4316 0.63 +1.1
5,038,336 + Pf6N2E2_4316 0.63 +0.1
5,038,337 - Pf6N2E2_4316 0.63 -0.1
5,038,337 - Pf6N2E2_4316 0.63 +0.1
5,038,337 - Pf6N2E2_4316 0.63 -0.1
5,038,337 - Pf6N2E2_4316 0.63 +0.1
5,038,337 - Pf6N2E2_4316 0.63 +1.1
5,038,337 - Pf6N2E2_4316 0.63 +0.1
5,038,344 + Pf6N2E2_4316 0.65 +0.1
5,038,344 + Pf6N2E2_4316 0.65 -0.5
5,038,344 + Pf6N2E2_4316 0.65 +0.1
5,038,345 - Pf6N2E2_4316 0.65 +0.1
5,038,345 - Pf6N2E2_4316 0.65 +1.1
5,038,375 + Pf6N2E2_4316 0.74 -0.5
5,038,376 - Pf6N2E2_4316 0.74 +1.7
5,038,376 - Pf6N2E2_4316 0.74 -0.6
5,038,376 - Pf6N2E2_4316 0.74 +0.1
5,038,376 - Pf6N2E2_4316 0.74 -0.9
5,038,376 - Pf6N2E2_4316 0.74 -0.3
5,038,376 - Pf6N2E2_4316 0.74 +0.1
5,038,376 - Pf6N2E2_4316 0.74 -0.8
5,038,438 + -0.3
5,038,438 + -0.5
5,038,439 - +0.1
5,038,439 - +0.1
5,038,615 + Pf6N2E2_4317 0.20 +1.1
5,038,615 + Pf6N2E2_4317 0.20 -0.5
5,038,615 + Pf6N2E2_4317 0.20 +0.6
5,038,615 + Pf6N2E2_4317 0.20 +1.1
5,038,666 + Pf6N2E2_4317 0.31 +1.1
5,038,958 - -1.3
5,038,985 - +0.8
5,039,122 + +1.1
5,039,227 + Pf6N2E2_4318 0.13 +1.1
5,039,227 + Pf6N2E2_4318 0.13 +0.1
5,039,227 + Pf6N2E2_4318 0.13 -0.4
5,039,227 + Pf6N2E2_4318 0.13 +1.1
5,039,228 - Pf6N2E2_4318 0.13 +1.1
5,039,228 - Pf6N2E2_4318 0.13 -0.6
5,039,228 - Pf6N2E2_4318 0.13 -1.5
5,039,557 + Pf6N2E2_4318 0.30 -1.2
5,039,557 + Pf6N2E2_4318 0.30 +0.1
5,039,557 + Pf6N2E2_4318 0.30 -2.0
5,039,557 + Pf6N2E2_4318 0.30 +1.1
5,039,729 - Pf6N2E2_4318 0.39 +1.1
5,039,939 - Pf6N2E2_4318 0.49 +0.1
5,039,939 - Pf6N2E2_4318 0.49 -0.8

Or see this region's nucleotide sequence