Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4140

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
4,817,947	+		Pf6N2E2_4139	0.41	-0.3
4,817,947	+		Pf6N2E2_4139	0.41	-0.7
4,817,947	+		Pf6N2E2_4139	0.41	-0.3
4,817,947	+		Pf6N2E2_4139	0.41	-0.2
4,817,947	+		Pf6N2E2_4139	0.41	-0.2
4,817,947	+		Pf6N2E2_4139	0.41	-0.2
4,817,947	+		Pf6N2E2_4139	0.41	-0.3
4,817,947	+				-0.5
4,817,947	+		Pf6N2E2_4139	0.41	-0.4
4,817,947	+		Pf6N2E2_4139	0.41	-0.3
4,817,948	-				-1.5
4,817,948	-		Pf6N2E2_4139	0.41	-0.2
4,817,948	-		Pf6N2E2_4139	0.41	-0.2
4,817,948	-		Pf6N2E2_4139	0.41	-0.0
4,817,948	-		Pf6N2E2_4139	0.41	-0.2
4,817,948	-		Pf6N2E2_4139	0.41	-0.2
4,817,948	-		Pf6N2E2_4139	0.41	+0.1
4,817,948	-		Pf6N2E2_4139	0.41	-0.4
4,817,948	-		Pf6N2E2_4139	0.41	-0.2
4,817,948	-		Pf6N2E2_4139	0.41	-0.3
4,817,948	-		Pf6N2E2_4139	0.41	-0.3
4,818,013	+		Pf6N2E2_4139	0.50	-0.3
4,818,013	+		Pf6N2E2_4139	0.50	-0.3
4,818,013	+		Pf6N2E2_4139	0.50	+0.4
4,818,013	+		Pf6N2E2_4139	0.50	-0.2
4,818,013	+		Pf6N2E2_4139	0.50	-0.2
4,818,013	+		Pf6N2E2_4139	0.50	-0.2
4,818,013	+		Pf6N2E2_4139	0.50	-0.2
4,818,013	+		Pf6N2E2_4139	0.50	-0.2
4,818,013	+		Pf6N2E2_4139	0.50	-0.2
4,818,013	+		Pf6N2E2_4139	0.50	-0.2
4,818,014	-		Pf6N2E2_4139	0.50	-0.1
4,818,014	-		Pf6N2E2_4139	0.50	-0.4
4,818,014	-		Pf6N2E2_4139	0.50	-0.2
4,818,014	-		Pf6N2E2_4139	0.50	-0.3
4,818,014	-		Pf6N2E2_4139	0.50	-0.2
4,818,014	-		Pf6N2E2_4139	0.50	-0.1
4,818,014	-		Pf6N2E2_4139	0.50	-0.2
4,818,014	-		Pf6N2E2_4139	0.50	-0.3
4,818,014	-		Pf6N2E2_4139	0.50	-0.2
4,818,271	+		Pf6N2E2_4139	0.83	-1.2
4,818,271	+		Pf6N2E2_4139	0.83	+0.1
4,818,272	-		Pf6N2E2_4139	0.83	+1.1
4,818,277	+		Pf6N2E2_4139	0.84	-0.9
4,818,277	+		Pf6N2E2_4139	0.84	-0.5
4,818,277	+		Pf6N2E2_4139	0.84	+1.1
4,818,277	+		Pf6N2E2_4139	0.84	-1.2
4,818,384	+				-1.2
4,818,384	+				+1.1
4,818,385	-				+1.1
4,818,398	-				+0.1
4,818,497	+				-0.3
4,818,499	+				+1.1
4,818,499	+				-0.5
4,818,499	+				+1.1
4,818,499	+				+0.1
4,818,499	+				+0.3
4,818,500	-				+0.9
4,818,500	-				+1.1
4,818,500	-				+1.1
4,818,500	-				+1.1
4,818,500	-				+0.4
4,818,500	-				-0.9
4,818,500	-				-0.5
4,818,500	-				+0.1
4,818,500	-				+0.1
4,818,500	-				+0.1
4,818,523	+				-0.9
4,818,524	-				-1.7
4,818,524	-				-0.5
4,818,524	-				+0.1
4,818,529	+				+1.1
4,818,530	-				-0.5
4,818,530	-				+0.1
4,818,530	-				+0.1
4,818,530	-				-0.4
4,818,557	+				-0.8
4,818,558	-				-0.9
4,818,594	+				-0.5
4,818,595	-				-0.5
4,818,595	-				-0.5
4,818,595	-				+1.1
4,818,595	-				+0.3
4,818,595	-				+1.1
4,818,595	-				+0.1
4,818,601	+				+1.1
4,818,601	+				-0.4
4,818,601	+				+2.1
4,818,601	+				-0.1
4,818,601	+				-0.5
4,818,601	+				+0.5
4,818,601	+				+0.1
4,818,601	+				+0.1
4,818,601	+				-0.0
4,818,601	+				+1.1
4,818,601	+				-0.5
4,818,601	+				-1.2
4,818,601	+				+1.1
4,818,601	+				-1.5
4,818,601	+				-0.9
4,818,601	+				-0.2
4,818,602	-				+1.1
4,818,602	-				-0.5
4,818,602	-				+1.1
4,818,602	-				-1.7
4,818,602	-				+1.1
4,818,602	-				+0.1
4,818,602	-				+1.1
4,818,602	-				+1.1
4,818,602	-				-0.5
4,818,602	-				+0.2
4,818,602	-				-0.5
4,818,602	-				+1.4
4,818,602	-				+1.1
4,818,602	-				+0.1
4,818,602	-				+0.1
4,818,602	-				-0.5
4,818,602	-				+0.1
4,818,602	-				+1.1
4,818,602	-				+0.1
4,818,605	+				+0.1
4,818,605	+				-0.6
4,818,605	+				-0.5
4,818,606	-				+0.1
4,818,652	+				+2.1
4,818,725	-				-0.5
4,818,752	+				+1.1
4,818,752	+				+1.1
4,818,752	+				+1.1
4,818,752	+				+1.1
4,818,752	+				+1.1
4,818,753	-				+1.1
4,819,223	+		Pf6N2E2_4140	0.33	+1.1
4,819,332	+		Pf6N2E2_4140	0.40	-1.2
4,819,332	+		Pf6N2E2_4140	0.40	-0.4
4,819,400	+		Pf6N2E2_4140	0.44	+0.1
4,819,400	+		Pf6N2E2_4140	0.44	+1.1
4,819,401	-		Pf6N2E2_4140	0.44	+1.1
4,819,401	-		Pf6N2E2_4140	0.44	+1.1
4,819,511	+		Pf6N2E2_4140	0.51	+0.2
4,819,511	+		Pf6N2E2_4140	0.51	-0.5
4,819,511	+		Pf6N2E2_4140	0.51	+0.0
4,819,511	+		Pf6N2E2_4140	0.51	+1.1
4,819,511	+		Pf6N2E2_4140	0.51	-0.1
4,819,512	-		Pf6N2E2_4140	0.51	+0.1
4,819,512	-		Pf6N2E2_4140	0.51	+0.4
4,819,512	-		Pf6N2E2_4140	0.51	+0.1
4,819,512	-		Pf6N2E2_4140	0.51	+0.8
4,819,513	+		Pf6N2E2_4140	0.51	-0.4
4,819,513	+		Pf6N2E2_4140	0.51	-0.5
4,819,513	+		Pf6N2E2_4140	0.51	-0.5
4,819,514	-		Pf6N2E2_4140	0.51	-0.5
4,819,780	-		Pf6N2E2_4140	0.67	+0.1
4,819,820	+		Pf6N2E2_4140	0.69	+0.1
4,819,820	+		Pf6N2E2_4140	0.69	+1.1
4,819,820	+		Pf6N2E2_4140	0.69	+0.4
4,819,820	+		Pf6N2E2_4140	0.69	+0.1
4,819,820	+		Pf6N2E2_4140	0.69	-0.2
4,819,820	+		Pf6N2E2_4140	0.69	+1.1
4,819,820	+		Pf6N2E2_4140	0.69	+0.7
4,819,820	+		Pf6N2E2_4140	0.69	+0.4
4,819,820	+		Pf6N2E2_4140	0.69	+1.1
4,819,820	+		Pf6N2E2_4140	0.69	+0.1
4,819,820	+		Pf6N2E2_4140	0.69	-0.5
4,819,820	+		Pf6N2E2_4140	0.69	-0.0
4,819,820	+		Pf6N2E2_4140	0.69	+0.1
4,819,821	-		Pf6N2E2_4140	0.69	+0.0
4,819,821	-		Pf6N2E2_4140	0.69	-0.9
4,819,821	-		Pf6N2E2_4140	0.69	-0.9
4,819,821	-		Pf6N2E2_4140	0.69	+0.1
4,819,821	-		Pf6N2E2_4140	0.69	+0.5
4,819,821	-		Pf6N2E2_4140	0.69	+1.1
4,819,821	-		Pf6N2E2_4140	0.69	-0.9
4,820,053	-		Pf6N2E2_4140	0.83	+1.1
4,820,252	+				+0.1
4,820,252	+				-0.5
4,820,252	+				+2.4
4,820,252	+				+1.1
4,820,252	+				+0.1
4,820,252	+				-0.0
4,820,252	+				-0.8
4,820,252	+				+0.2
4,820,252	+				+1.1
4,820,252	+				-0.2
4,820,252	+				+0.7
4,820,253	-				+1.1
4,820,253	-				+1.1
4,820,253	-				+1.1
4,820,253	-				+0.1
4,820,253	-				-0.9
4,820,253	-				-0.9
4,820,253	-				+1.1
4,820,253	-				-0.2
4,820,253	-				-0.5
4,820,253	-				-0.9
4,820,253	-				+0.1
4,820,351	+				+1.1
4,820,352	-				+1.1
4,820,352	-				-0.6
4,820,409	-				+1.1
4,820,409	-				+0.1
4,820,409	-				+1.1
4,820,415	+				-0.5
4,820,415	+				-1.5
4,820,415	+				+1.1
4,820,513	-				+1.1
4,820,541	+				-0.4
4,820,541	+				-1.2
4,820,542	-				+1.1
4,820,591	+				-1.2
4,820,591	+				-0.5
4,820,591	+				+1.1
4,820,593	+				+0.1
4,820,593	+				-0.2
4,820,593	+				-2.5
4,820,593	+				+1.1
4,820,593	+				-0.4
4,820,593	+				+0.1
4,820,593	+				+0.1
4,820,593	+				+1.1
4,820,593	+				+1.1
4,820,593	+				+1.1
4,820,593	+				+1.1
4,820,593	+				+0.1
4,820,594	-				+1.1
4,820,594	-				+0.1
4,820,594	-				-0.9
4,820,594	-				+1.1
4,820,594	-				+0.1
4,820,594	-				-0.5
4,820,594	-				-0.5
4,820,594	-				+1.1
4,820,594	-				-1.2
4,820,594	-				+0.1
4,820,594	-				-0.1
4,820,594	-				-0.1
4,820,594	-				-1.2
4,820,594	-				+1.1
4,820,594	-				+0.1
4,820,594	-				-0.5
4,820,594	-				-1.2
4,820,969	+		Pf6N2E2_4141	0.33	-0.5
4,820,969	+		Pf6N2E2_4141	0.33	-0.4
4,820,970	-		Pf6N2E2_4141	0.33	+1.1
4,820,970	-		Pf6N2E2_4141	0.33	+0.1
4,820,970	-		Pf6N2E2_4141	0.33	+1.1
4,821,119	+		Pf6N2E2_4141	0.44	-0.4
4,821,120	-		Pf6N2E2_4141	0.44	-1.5
4,821,252	-		Pf6N2E2_4141	0.53	+1.1