Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_397 and Pf6N2E2_398 are separated by 209 nucleotides Pf6N2E2_398 and Pf6N2E2_399 overlap by 4 nucleotides Pf6N2E2_399 and Pf6N2E2_400 are separated by 108 nucleotides
Pf6N2E2_397 - Large exoproteins involved in heme utilization or adhesion, at 465,083 to 467,020
_397
Pf6N2E2_398 - FIG006045: Sigma factor, ECF subfamily, at 467,230 to 467,736
_398
Pf6N2E2_399 - Iron siderophore sensor protein, at 467,733 to 468,656
_399
Pf6N2E2_400 - Ferrichrome-iron receptor, at 468,765 to 471,185
_400
Position (kb) 467
468
469 Strain fitness (log2 ratio) -1
0
1 at 466.749 kb on + strand, within Pf6N2E2_397 at 466.749 kb on + strand, within Pf6N2E2_397 at 466.749 kb on + strand, within Pf6N2E2_397 at 466.750 kb on - strand, within Pf6N2E2_397 at 466.750 kb on - strand, within Pf6N2E2_397 at 466.834 kb on + strand at 466.835 kb on - strand at 466.936 kb on + strand at 466.937 kb on - strand at 466.938 kb on + strand at 466.939 kb on - strand at 466.939 kb on - strand at 466.939 kb on - strand at 466.954 kb on + strand at 466.955 kb on - strand at 467.084 kb on - strand at 467.087 kb on + strand at 467.088 kb on - strand at 467.088 kb on - strand at 467.088 kb on - strand at 467.088 kb on - strand at 467.088 kb on - strand at 467.088 kb on - strand at 467.088 kb on - strand at 467.108 kb on - strand at 467.486 kb on + strand, within Pf6N2E2_398 at 467.487 kb on - strand, within Pf6N2E2_398 at 467.487 kb on - strand, within Pf6N2E2_398 at 467.487 kb on - strand, within Pf6N2E2_398 at 467.683 kb on + strand, within Pf6N2E2_398 at 467.683 kb on + strand, within Pf6N2E2_398 at 467.683 kb on + strand, within Pf6N2E2_398 at 467.683 kb on + strand, within Pf6N2E2_398 at 467.683 kb on + strand, within Pf6N2E2_398 at 467.683 kb on + strand, within Pf6N2E2_398 at 467.684 kb on - strand, within Pf6N2E2_398 at 467.684 kb on - strand, within Pf6N2E2_398 at 467.684 kb on - strand, within Pf6N2E2_398 at 467.684 kb on - strand, within Pf6N2E2_398 at 467.685 kb on + strand, within Pf6N2E2_398 at 467.902 kb on + strand, within Pf6N2E2_399 at 467.903 kb on - strand, within Pf6N2E2_399 at 467.903 kb on - strand, within Pf6N2E2_399 at 468.030 kb on + strand, within Pf6N2E2_399 at 468.030 kb on + strand, within Pf6N2E2_399 at 468.031 kb on - strand, within Pf6N2E2_399 at 468.031 kb on - strand, within Pf6N2E2_399 at 468.674 kb on + strand at 468.693 kb on + strand at 468.936 kb on + strand at 468.936 kb on + strand at 468.937 kb on - strand at 468.937 kb on - strand at 468.990 kb on + strand at 469.118 kb on + strand, within Pf6N2E2_400 at 469.119 kb on - strand, within Pf6N2E2_400 at 469.161 kb on + strand, within Pf6N2E2_400 at 469.161 kb on + strand, within Pf6N2E2_400 at 469.248 kb on + strand, within Pf6N2E2_400 at 469.248 kb on + strand, within Pf6N2E2_400 at 469.248 kb on + strand, within Pf6N2E2_400 at 469.249 kb on - strand, within Pf6N2E2_400 at 469.249 kb on - strand, within Pf6N2E2_400 at 469.249 kb on - strand, within Pf6N2E2_400 at 469.587 kb on + strand, within Pf6N2E2_400 at 469.588 kb on - strand, within Pf6N2E2_400 at 469.588 kb on - strand, within Pf6N2E2_400
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 466,749 + Pf6N2E2_397 0.86 +0.9 466,749 + Pf6N2E2_397 0.86 -0.4 466,749 + Pf6N2E2_397 0.86 -0.1 466,750 - Pf6N2E2_397 0.86 -1.0 466,750 - Pf6N2E2_397 0.86 -0.6 466,834 + +0.9 466,835 - -0.1 466,936 + +0.9 466,937 - +0.2 466,938 + +0.9 466,939 - -1.0 466,939 - -0.1 466,939 - +0.0 466,954 + -0.1 466,955 - +0.9 467,084 - +0.9 467,087 + -0.1 467,088 - -0.1 467,088 - -0.1 467,088 - -0.6 467,088 - +0.9 467,088 - +0.9 467,088 - +0.9 467,088 - +0.9 467,108 - -1.1 467,486 + Pf6N2E2_398 0.50 -1.7 467,487 - Pf6N2E2_398 0.51 -0.3 467,487 - Pf6N2E2_398 0.51 +0.9 467,487 - Pf6N2E2_398 0.51 +0.9 467,683 + Pf6N2E2_398 0.89 +0.9 467,683 + Pf6N2E2_398 0.89 -0.1 467,683 + Pf6N2E2_398 0.89 +0.6 467,683 + Pf6N2E2_398 0.89 -1.1 467,683 + Pf6N2E2_398 0.89 +0.9 467,683 + Pf6N2E2_398 0.89 -0.1 467,684 - Pf6N2E2_398 0.90 +0.9 467,684 - Pf6N2E2_398 0.90 +0.9 467,684 - Pf6N2E2_398 0.90 +0.9 467,684 - Pf6N2E2_398 0.90 +0.9 467,685 + Pf6N2E2_398 0.90 -1.5 467,902 + Pf6N2E2_399 0.18 +0.9 467,903 - Pf6N2E2_399 0.18 -0.7 467,903 - Pf6N2E2_399 0.18 +0.9 468,030 + Pf6N2E2_399 0.32 -0.1 468,030 + Pf6N2E2_399 0.32 +0.5 468,031 - Pf6N2E2_399 0.32 +0.9 468,031 - Pf6N2E2_399 0.32 +0.2 468,674 + +0.9 468,693 + +0.9 468,936 + -0.1 468,936 + -0.4 468,937 - +0.9 468,937 - -0.1 468,990 + +0.9 469,118 + Pf6N2E2_400 0.15 +0.0 469,119 - Pf6N2E2_400 0.15 +0.9 469,161 + Pf6N2E2_400 0.16 +0.9 469,161 + Pf6N2E2_400 0.16 -0.5 469,248 + Pf6N2E2_400 0.20 -0.1 469,248 + Pf6N2E2_400 0.20 -1.1 469,248 + Pf6N2E2_400 0.20 -0.1 469,249 - Pf6N2E2_400 0.20 +0.9 469,249 - Pf6N2E2_400 0.20 +0.9 469,249 - Pf6N2E2_400 0.20 -0.5 469,587 + Pf6N2E2_400 0.34 +0.9 469,588 - Pf6N2E2_400 0.34 +0.9 469,588 - Pf6N2E2_400 0.34 -0.3
Or see this region's nucleotide sequence