Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3989

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
4,656,972	+		Pf6N2E2_3988	0.75	+1.1
4,656,973	-		Pf6N2E2_3988	0.75	-0.9
4,656,973	-		Pf6N2E2_3988	0.75	+0.1
4,656,973	-		Pf6N2E2_3988	0.75	-0.5
4,656,982	+		Pf6N2E2_3988	0.76	+0.1
4,656,982	+		Pf6N2E2_3988	0.76	+1.1
4,656,983	-		Pf6N2E2_3988	0.76	+1.1
4,656,983	-		Pf6N2E2_3988	0.76	-1.7
4,657,209	+		Pf6N2E2_3988	0.82	+1.1
4,657,209	+		Pf6N2E2_3988	0.82	+1.1
4,657,210	-		Pf6N2E2_3988	0.82	+1.1
4,657,224	+		Pf6N2E2_3988	0.83	-0.7
4,657,225	-		Pf6N2E2_3988	0.83	+1.1
4,657,536	+				+0.1
4,657,536	+				+1.1
4,657,536	+				+0.1
4,657,537	-				-0.2
4,657,537	-				-0.5
4,657,537	-				+0.1
4,657,537	-				-0.4
4,657,653	+				+0.1
4,657,686	-				+0.1
4,657,686	-				+0.1
4,657,785	+				+0.1
4,657,785	+				-0.3
4,657,785	+				-0.5
4,657,785	+				-1.1
4,657,786	-				+0.1
4,657,947	+		Pf6N2E2_3989	0.22	-0.3
4,657,947	+		Pf6N2E2_3989	0.22	+0.5
4,657,948	-		Pf6N2E2_3989	0.22	-0.9
4,657,948	-		Pf6N2E2_3989	0.22	+1.1
4,658,120	+		Pf6N2E2_3989	0.59	+1.1
4,658,121	-		Pf6N2E2_3989	0.60	+1.1
4,658,121	-		Pf6N2E2_3989	0.60	+1.1
4,658,335	+				-0.4
4,658,335	+				-0.9
4,658,335	+				+0.1
4,658,336	-				+0.1
4,658,336	-				-0.5
4,658,336	-				+1.1
4,658,336	-				+0.3
4,658,336	-				-0.9
4,658,336	-				+0.1
4,658,697	+				-0.1
4,658,698	-				+1.1
4,659,015	+		Pf6N2E2_3990	0.18	+1.1
4,659,015	+		Pf6N2E2_3990	0.18	+1.1