Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3826 and Pf6N2E2_3827 are separated by 491 nucleotides Pf6N2E2_3827 and Pf6N2E2_3828 overlap by 2 nucleotides Pf6N2E2_3828 and Pf6N2E2_3829 are separated by 118 nucleotides
Pf6N2E2_3826 - Nitrogen regulation protein NR(I), at 4,460,946 to 4,462,382
_3826
Pf6N2E2_3827 - FIG00955429: hypothetical protein, at 4,462,874 to 4,463,314
_3827
Pf6N2E2_3828 - tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207), at 4,463,313 to 4,463,768
_3828
Pf6N2E2_3829 - Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state), at 4,463,887 to 4,464,369
_3829
Position (kb)
4462
4463
4464 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4461.987 kb on + strand, within Pf6N2E2_3826 at 4461.988 kb on - strand, within Pf6N2E2_3826 at 4461.988 kb on - strand, within Pf6N2E2_3826 at 4462.049 kb on + strand, within Pf6N2E2_3826 at 4462.050 kb on - strand, within Pf6N2E2_3826 at 4462.050 kb on - strand, within Pf6N2E2_3826 at 4462.307 kb on + strand at 4462.307 kb on + strand at 4462.308 kb on - strand at 4462.390 kb on + strand at 4462.390 kb on + strand at 4462.390 kb on + strand at 4462.390 kb on + strand at 4462.390 kb on + strand at 4462.390 kb on + strand at 4462.391 kb on - strand at 4462.391 kb on - strand at 4462.484 kb on - strand at 4462.647 kb on - strand at 4462.669 kb on + strand at 4462.704 kb on - strand at 4462.730 kb on + strand at 4462.732 kb on + strand at 4462.797 kb on + strand at 4462.797 kb on + strand at 4462.797 kb on + strand at 4462.797 kb on + strand at 4462.797 kb on + strand at 4462.849 kb on - strand at 4462.875 kb on + strand at 4462.875 kb on + strand at 4462.875 kb on + strand at 4462.876 kb on - strand at 4462.876 kb on - strand at 4462.876 kb on - strand at 4462.876 kb on - strand at 4462.876 kb on - strand at 4462.876 kb on - strand at 4462.876 kb on - strand at 4463.028 kb on - strand, within Pf6N2E2_3827 at 4463.028 kb on - strand, within Pf6N2E2_3827 at 4463.142 kb on - strand, within Pf6N2E2_3827 at 4463.142 kb on - strand, within Pf6N2E2_3827 at 4463.249 kb on + strand, within Pf6N2E2_3827 at 4463.249 kb on + strand, within Pf6N2E2_3827 at 4463.249 kb on + strand, within Pf6N2E2_3827 at 4463.249 kb on + strand, within Pf6N2E2_3827 at 4463.249 kb on + strand, within Pf6N2E2_3827 at 4463.250 kb on - strand, within Pf6N2E2_3827 at 4463.250 kb on - strand, within Pf6N2E2_3827 at 4463.250 kb on - strand, within Pf6N2E2_3827 at 4463.250 kb on - strand, within Pf6N2E2_3827 at 4463.250 kb on - strand, within Pf6N2E2_3827 at 4463.250 kb on - strand, within Pf6N2E2_3827 at 4463.278 kb on + strand at 4463.278 kb on + strand at 4463.278 kb on + strand at 4463.278 kb on + strand at 4463.278 kb on + strand at 4463.278 kb on + strand at 4463.278 kb on + strand at 4463.279 kb on - strand at 4463.472 kb on + strand, within Pf6N2E2_3828 at 4463.472 kb on + strand, within Pf6N2E2_3828 at 4463.473 kb on - strand, within Pf6N2E2_3828 at 4463.473 kb on - strand, within Pf6N2E2_3828 at 4463.547 kb on - strand, within Pf6N2E2_3828 at 4463.737 kb on - strand at 4463.737 kb on - strand at 4463.764 kb on + strand at 4463.764 kb on + strand at 4463.764 kb on + strand at 4463.764 kb on + strand at 4463.764 kb on + strand at 4463.765 kb on - strand at 4463.765 kb on - strand at 4463.765 kb on - strand at 4463.765 kb on - strand at 4463.767 kb on - strand at 4463.767 kb on - strand at 4463.888 kb on + strand at 4463.888 kb on + strand at 4463.889 kb on - strand at 4463.889 kb on - strand at 4463.939 kb on + strand, within Pf6N2E2_3829 at 4464.299 kb on + strand, within Pf6N2E2_3829 at 4464.299 kb on + strand, within Pf6N2E2_3829 at 4464.299 kb on + strand, within Pf6N2E2_3829 at 4464.299 kb on + strand, within Pf6N2E2_3829 at 4464.299 kb on + strand, within Pf6N2E2_3829 at 4464.300 kb on - strand, within Pf6N2E2_3829 at 4464.300 kb on - strand, within Pf6N2E2_3829 at 4464.300 kb on - strand, within Pf6N2E2_3829 at 4464.300 kb on - strand, within Pf6N2E2_3829 at 4464.300 kb on - strand, within Pf6N2E2_3829
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 4,461,987 + Pf6N2E2_3826 0.72 -3.2 4,461,988 - Pf6N2E2_3826 0.73 +0.1 4,461,988 - Pf6N2E2_3826 0.73 +1.1 4,462,049 + Pf6N2E2_3826 0.77 +0.1 4,462,050 - Pf6N2E2_3826 0.77 +0.1 4,462,050 - Pf6N2E2_3826 0.77 +1.1 4,462,307 + +0.1 4,462,307 + -2.2 4,462,308 - +0.1 4,462,390 + -2.2 4,462,390 + +0.1 4,462,390 + -0.9 4,462,390 + +1.1 4,462,390 + +1.1 4,462,390 + -0.9 4,462,391 - -0.4 4,462,391 - -0.5 4,462,484 - +0.1 4,462,647 - -0.5 4,462,669 + -0.3 4,462,704 - -0.7 4,462,730 + +1.1 4,462,732 + +0.1 4,462,797 + -0.5 4,462,797 + -0.5 4,462,797 + -1.5 4,462,797 + +1.1 4,462,797 + +0.1 4,462,849 - +1.1 4,462,875 + +2.1 4,462,875 + +1.1 4,462,875 + +1.1 4,462,876 - +1.1 4,462,876 - +1.1 4,462,876 - -1.5 4,462,876 - +1.1 4,462,876 - +1.1 4,462,876 - +0.1 4,462,876 - -0.4 4,463,028 - Pf6N2E2_3827 0.35 +1.1 4,463,028 - Pf6N2E2_3827 0.35 +0.1 4,463,142 - Pf6N2E2_3827 0.61 -0.2 4,463,142 - Pf6N2E2_3827 0.61 -0.2 4,463,249 + Pf6N2E2_3827 0.85 +1.1 4,463,249 + Pf6N2E2_3827 0.85 +0.0 4,463,249 + Pf6N2E2_3827 0.85 -0.1 4,463,249 + Pf6N2E2_3827 0.85 +1.1 4,463,249 + Pf6N2E2_3827 0.85 +0.3 4,463,250 - Pf6N2E2_3827 0.85 -0.4 4,463,250 - Pf6N2E2_3827 0.85 +0.1 4,463,250 - Pf6N2E2_3827 0.85 -0.5 4,463,250 - Pf6N2E2_3827 0.85 -0.1 4,463,250 - Pf6N2E2_3827 0.85 +0.1 4,463,250 - Pf6N2E2_3827 0.85 +0.1 4,463,278 + +1.1 4,463,278 + -0.3 4,463,278 + +0.4 4,463,278 + +1.1 4,463,278 + +0.6 4,463,278 + +0.3 4,463,278 + +0.1 4,463,279 - +0.3 4,463,472 + Pf6N2E2_3828 0.35 -0.5 4,463,472 + Pf6N2E2_3828 0.35 +0.1 4,463,473 - Pf6N2E2_3828 0.35 +1.1 4,463,473 - Pf6N2E2_3828 0.35 +1.1 4,463,547 - Pf6N2E2_3828 0.51 +1.1 4,463,737 - +0.1 4,463,737 - +1.1 4,463,764 + -0.1 4,463,764 + +0.1 4,463,764 + +1.1 4,463,764 + +0.1 4,463,764 + +0.1 4,463,765 - -0.4 4,463,765 - +1.1 4,463,765 - -0.5 4,463,765 - +0.1 4,463,767 - +0.1 4,463,767 - +1.1 4,463,888 + -0.2 4,463,888 + +0.1 4,463,889 - +1.1 4,463,889 - -1.8 4,463,939 + Pf6N2E2_3829 0.11 +1.1 4,464,299 + Pf6N2E2_3829 0.85 +1.1 4,464,299 + Pf6N2E2_3829 0.85 +1.1 4,464,299 + Pf6N2E2_3829 0.85 +0.1 4,464,299 + Pf6N2E2_3829 0.85 +1.1 4,464,299 + Pf6N2E2_3829 0.85 +0.1 4,464,300 - Pf6N2E2_3829 0.86 +0.1 4,464,300 - Pf6N2E2_3829 0.86 -0.9 4,464,300 - Pf6N2E2_3829 0.86 +0.1 4,464,300 - Pf6N2E2_3829 0.86 -0.4 4,464,300 - Pf6N2E2_3829 0.86 -0.5
Or see this region's nucleotide sequence