Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3827

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
4,461,987	+		Pf6N2E2_3826	0.72	-3.2
4,461,988	-		Pf6N2E2_3826	0.73	+0.1
4,461,988	-		Pf6N2E2_3826	0.73	+1.1
4,462,049	+		Pf6N2E2_3826	0.77	+0.1
4,462,050	-		Pf6N2E2_3826	0.77	+0.1
4,462,050	-		Pf6N2E2_3826	0.77	+1.1
4,462,307	+				+0.1
4,462,307	+				-2.2
4,462,308	-				+0.1
4,462,390	+				-2.2
4,462,390	+				+0.1
4,462,390	+				-0.9
4,462,390	+				+1.1
4,462,390	+				+1.1
4,462,390	+				-0.9
4,462,391	-				-0.4
4,462,391	-				-0.5
4,462,484	-				+0.1
4,462,647	-				-0.5
4,462,669	+				-0.3
4,462,704	-				-0.7
4,462,730	+				+1.1
4,462,732	+				+0.1
4,462,797	+				-0.5
4,462,797	+				-0.5
4,462,797	+				-1.5
4,462,797	+				+1.1
4,462,797	+				+0.1
4,462,849	-				+1.1
4,462,875	+				+2.1
4,462,875	+				+1.1
4,462,875	+				+1.1
4,462,876	-				+1.1
4,462,876	-				+1.1
4,462,876	-				-1.5
4,462,876	-				+1.1
4,462,876	-				+1.1
4,462,876	-				+0.1
4,462,876	-				-0.4
4,463,028	-		Pf6N2E2_3827	0.35	+1.1
4,463,028	-		Pf6N2E2_3827	0.35	+0.1
4,463,142	-		Pf6N2E2_3827	0.61	-0.2
4,463,142	-		Pf6N2E2_3827	0.61	-0.2
4,463,249	+		Pf6N2E2_3827	0.85	+1.1
4,463,249	+		Pf6N2E2_3827	0.85	+0.0
4,463,249	+		Pf6N2E2_3827	0.85	-0.1
4,463,249	+		Pf6N2E2_3827	0.85	+1.1
4,463,249	+		Pf6N2E2_3827	0.85	+0.3
4,463,250	-		Pf6N2E2_3827	0.85	-0.4
4,463,250	-		Pf6N2E2_3827	0.85	+0.1
4,463,250	-		Pf6N2E2_3827	0.85	-0.5
4,463,250	-		Pf6N2E2_3827	0.85	-0.1
4,463,250	-		Pf6N2E2_3827	0.85	+0.1
4,463,250	-		Pf6N2E2_3827	0.85	+0.1
4,463,278	+				+1.1
4,463,278	+				-0.3
4,463,278	+				+0.4
4,463,278	+				+1.1
4,463,278	+				+0.6
4,463,278	+				+0.3
4,463,278	+				+0.1
4,463,279	-				+0.3
4,463,472	+		Pf6N2E2_3828	0.35	-0.5
4,463,472	+		Pf6N2E2_3828	0.35	+0.1
4,463,473	-		Pf6N2E2_3828	0.35	+1.1
4,463,473	-		Pf6N2E2_3828	0.35	+1.1
4,463,547	-		Pf6N2E2_3828	0.51	+1.1
4,463,737	-				+0.1
4,463,737	-				+1.1
4,463,764	+				-0.1
4,463,764	+				+0.1
4,463,764	+				+1.1
4,463,764	+				+0.1
4,463,764	+				+0.1
4,463,765	-				-0.4
4,463,765	-				+1.1
4,463,765	-				-0.5
4,463,765	-				+0.1
4,463,767	-				+0.1
4,463,767	-				+1.1
4,463,888	+				-0.2
4,463,888	+				+0.1
4,463,889	-				+1.1
4,463,889	-				-1.8
4,463,939	+		Pf6N2E2_3829	0.11	+1.1
4,464,299	+		Pf6N2E2_3829	0.85	+1.1
4,464,299	+		Pf6N2E2_3829	0.85	+1.1
4,464,299	+		Pf6N2E2_3829	0.85	+0.1
4,464,299	+		Pf6N2E2_3829	0.85	+1.1
4,464,299	+		Pf6N2E2_3829	0.85	+0.1
4,464,300	-		Pf6N2E2_3829	0.86	+0.1
4,464,300	-		Pf6N2E2_3829	0.86	-0.9
4,464,300	-		Pf6N2E2_3829	0.86	+0.1
4,464,300	-		Pf6N2E2_3829	0.86	-0.4
4,464,300	-		Pf6N2E2_3829	0.86	-0.5