Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3478

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
4,058,769	+		Pf6N2E2_3477	0.64	+1.0
4,058,896	-		Pf6N2E2_3477	0.77	-0.8
4,059,031	-				+0.0
4,059,031	-				+0.3
4,059,081	+				-2.7
4,059,081	+				+1.0
4,059,081	+				+1.0
4,059,081	+				+0.0
4,059,081	+				+1.0
4,059,081	+				-0.5
4,059,081	+				+1.0
4,059,081	+				+1.0
4,059,081	+				-1.0
4,059,081	+				-0.5
4,059,081	+				+1.0
4,059,081	+				+1.0
4,059,081	+				-0.5
4,059,081	+				+0.5
4,059,082	-				-0.8
4,059,082	-				-0.3
4,059,082	-				+1.0
4,059,082	-				-1.0
4,059,082	-				+0.0
4,059,082	-				+0.0
4,059,082	-				+0.6
4,059,082	-				+1.0
4,059,082	-				-0.5
4,059,082	-				-0.5
4,059,082	-				+1.0
4,059,082	-				+1.0
4,059,082	-				+1.0
4,059,082	-				+0.0
4,059,082	-				-1.3
4,059,082	-				-0.5
4,059,082	-				-1.0
4,059,082	-				+1.0
4,059,082	-				-1.0
4,059,082	-				+0.0
4,059,082	-				-0.6
4,059,082	-				+0.0
4,059,082	-				-1.3
4,059,082	-				+0.5
4,059,112	-				+0.0
4,059,159	+				-0.5
4,059,160	-				+0.1
4,059,200	+				-0.5
4,059,200	+				-0.3
4,059,200	+				+1.1
4,059,200	+				+1.1
4,059,200	+				+1.1
4,059,200	+				+0.1
4,059,200	+				-0.3
4,059,200	+				-0.9
4,059,201	-				+1.1
4,059,201	-				+0.1
4,059,201	-				-0.2
4,059,201	-				-0.2
4,059,201	-				+0.5
4,059,201	-				+1.1
4,059,201	-				+1.1
4,059,201	-				-0.5
4,059,201	-				-1.0
4,059,201	-				+1.1
4,059,201	-				-0.5
4,059,201	-				+0.1
4,059,341	+		Pf6N2E2_3478	0.15	-0.3
4,059,342	-		Pf6N2E2_3478	0.15	+1.1
4,059,342	-		Pf6N2E2_3478	0.15	+0.9
4,059,342	-		Pf6N2E2_3478	0.15	+0.1
4,059,342	-		Pf6N2E2_3478	0.15	+1.1
4,059,377	+		Pf6N2E2_3478	0.19	+0.2
4,059,380	+		Pf6N2E2_3478	0.19	+1.1
4,059,380	+		Pf6N2E2_3478	0.19	+0.1
4,059,380	+		Pf6N2E2_3478	0.19	+1.1
4,059,381	-		Pf6N2E2_3478	0.19	+1.1
4,059,419	+		Pf6N2E2_3478	0.23	-0.6
4,059,419	+		Pf6N2E2_3478	0.23	-0.9
4,059,419	+		Pf6N2E2_3478	0.23	+0.5
4,059,437	+		Pf6N2E2_3478	0.25	-0.9
4,059,515	-		Pf6N2E2_3478	0.33	+0.1
4,059,803	+		Pf6N2E2_3478	0.64	+0.1
4,059,804	-		Pf6N2E2_3478	0.64	+1.1
4,060,070	+				+1.6
4,060,070	+				+1.1
4,060,070	+				-0.2
4,060,070	+				+0.1
4,060,071	-				-0.4
4,060,071	-				-0.3
4,060,071	-				-0.5
4,060,071	-				+1.1
4,060,072	+				-0.9
4,060,073	-				-1.9
4,060,140	+				-0.9
4,060,140	+				+2.6
4,060,277	-				+1.1
4,060,320	-				+0.1
4,060,320	-				+0.5
4,060,548	-		Pf6N2E2_3479	0.16	-0.3
4,060,548	-		Pf6N2E2_3479	0.16	-1.8
4,060,562	+		Pf6N2E2_3479	0.18	+0.1
4,060,562	+		Pf6N2E2_3479	0.18	-0.6
4,060,563	-		Pf6N2E2_3479	0.18	-1.5
4,060,563	-		Pf6N2E2_3479	0.18	+0.1
4,060,568	+		Pf6N2E2_3479	0.18	+0.1
4,060,568	+		Pf6N2E2_3479	0.18	+1.1
4,060,568	+		Pf6N2E2_3479	0.18	+0.1
4,060,791	-		Pf6N2E2_3479	0.34	-0.5
4,060,791	-		Pf6N2E2_3479	0.34	-0.4
4,060,791	-		Pf6N2E2_3479	0.34	-0.5
4,060,791	-		Pf6N2E2_3479	0.34	-0.5
4,060,791	-		Pf6N2E2_3479	0.34	+0.1
4,060,793	+		Pf6N2E2_3479	0.34	-0.5
4,060,793	+		Pf6N2E2_3479	0.34	-1.4
4,060,794	-		Pf6N2E2_3479	0.34	-0.8
4,060,859	+		Pf6N2E2_3479	0.39	+0.1
4,060,917	-		Pf6N2E2_3479	0.43	+0.1