Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2785

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
3,273,460	-				-1.1
3,273,460	-				+1.0
3,273,460	-				+1.0
3,273,534	+		Pf6N2E2_2783	0.13	+1.0
3,273,535	-		Pf6N2E2_2783	0.13	+1.0
3,273,537	+		Pf6N2E2_2783	0.13	-0.0
3,273,537	+		Pf6N2E2_2783	0.13	+1.0
3,273,582	+		Pf6N2E2_2783	0.19	+1.0
3,273,582	+		Pf6N2E2_2783	0.19	-0.6
3,273,582	+		Pf6N2E2_2783	0.19	+1.0
3,273,583	-		Pf6N2E2_2783	0.19	-1.0
3,273,583	-		Pf6N2E2_2783	0.19	-1.4
3,273,583	-		Pf6N2E2_2783	0.19	+1.0
3,273,583	-		Pf6N2E2_2783	0.19	-0.4
3,273,604	+		Pf6N2E2_2783	0.22	+1.0
3,273,604	+		Pf6N2E2_2783	0.22	-0.6
3,273,605	-		Pf6N2E2_2783	0.22	+1.8
3,273,605	-		Pf6N2E2_2783	0.22	+1.0
3,273,654	+		Pf6N2E2_2783	0.29	-0.0
3,273,655	-		Pf6N2E2_2783	0.29	-0.6
3,273,655	-		Pf6N2E2_2783	0.29	-0.0
3,273,655	-		Pf6N2E2_2783	0.29	+2.0
3,274,011	+		Pf6N2E2_2783	0.77	-1.4
3,274,011	+		Pf6N2E2_2783	0.77	+1.0
3,274,012	-		Pf6N2E2_2783	0.77	-0.6
3,274,012	-		Pf6N2E2_2783	0.77	-0.6
3,274,176	+				-0.0
3,274,177	-				+1.0
3,274,177	-				+1.0
3,274,183	-				-0.0
3,274,268	-		Pf6N2E2_2784	0.42	+1.0
3,274,454	+				+1.0
3,274,614	+		Pf6N2E2_2785	0.26	-0.0
3,274,615	-		Pf6N2E2_2785	0.27	-0.6
3,274,615	-		Pf6N2E2_2785	0.27	-0.6
3,274,824	+		Pf6N2E2_2785	0.57	-0.0
3,274,824	+		Pf6N2E2_2785	0.57	+1.0
3,274,824	+		Pf6N2E2_2785	0.57	-2.8
3,274,825	-		Pf6N2E2_2785	0.57	+1.0
3,274,825	-		Pf6N2E2_2785	0.57	-1.2
3,274,825	-		Pf6N2E2_2785	0.57	-0.6
3,274,825	-		Pf6N2E2_2785	0.57	-0.6
3,274,825	-		Pf6N2E2_2785	0.57	-0.0
3,274,828	-		Pf6N2E2_2785	0.57	+1.0
3,274,828	-		Pf6N2E2_2785	0.57	-0.8
3,274,887	+		Pf6N2E2_2785	0.66	-0.0
3,274,887	+		Pf6N2E2_2785	0.66	+1.0
3,274,888	-		Pf6N2E2_2785	0.66	-0.0
3,274,888	-		Pf6N2E2_2785	0.66	-0.0
3,274,888	-		Pf6N2E2_2785	0.66	+1.0
3,274,888	-		Pf6N2E2_2785	0.66	-0.0
3,274,978	-		Pf6N2E2_2785	0.79	-0.9
3,275,168	+				+1.0
3,275,169	-				-0.3
3,275,169	-				-0.6
3,275,238	+				+1.0
3,275,239	-				-0.0
3,275,239	-				+1.0
3,275,308	+				+1.0
3,275,308	+				+1.0
3,275,308	+				-0.6
3,275,309	-				-0.6
3,275,310	+				+1.0
3,275,310	+				+0.1
3,275,311	-				-1.7
3,275,311	-				+1.0
3,275,363	+				-2.2
3,275,363	+				-0.0
3,275,363	+				+0.2
3,275,363	+				-0.0
3,275,364	-				-0.1
3,275,364	-				+1.0
3,275,364	-				-0.0
3,275,364	-				+1.0
3,275,364	-				+1.0
3,275,364	-				+1.0
3,275,364	-				-0.6
3,275,364	-				+1.0
3,275,364	-				-1.0
3,275,369	+				+1.0
3,275,370	-				-0.6
3,275,426	+				+1.0
3,275,460	+				-0.0
3,275,460	+				-0.7
3,275,460	+				+1.0
3,275,460	+				-0.0
3,275,461	-				-0.0
3,275,461	-				+1.0
3,275,461	-				-0.6
3,275,461	-				-0.4
3,275,461	-				-0.6
3,275,461	-				+1.0
3,275,461	-				+1.0
3,275,461	-				+1.0
3,275,461	-				-0.6
3,275,461	-				-0.0
3,275,461	-				+1.0
3,275,481	-				+1.0
3,275,864	+		Pf6N2E2_2786	0.49	-0.0
3,275,955	-		Pf6N2E2_2786	0.59	+1.0
3,275,987	+		Pf6N2E2_2786	0.63	+1.0
3,275,988	-		Pf6N2E2_2786	0.63	+0.4
3,276,041	+		Pf6N2E2_2786	0.69	-0.0
3,276,041	+		Pf6N2E2_2786	0.69	+1.0
3,276,042	-		Pf6N2E2_2786	0.69	-0.0
3,276,042	-		Pf6N2E2_2786	0.69	+1.0
3,276,042	-		Pf6N2E2_2786	0.69	+1.0
3,276,104	+		Pf6N2E2_2786	0.76	-0.4
3,276,104	+		Pf6N2E2_2786	0.76	+1.0
3,276,104	+		Pf6N2E2_2786	0.76	+1.0
3,276,104	+		Pf6N2E2_2786	0.76	+1.0
3,276,105	-		Pf6N2E2_2786	0.76	+1.0