Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2710

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
3,202,606	+		Pf6N2E2_2709	0.72	+1.0
3,202,606	+		Pf6N2E2_2709	0.72	-0.0
3,202,606	+		Pf6N2E2_2709	0.72	+1.0
3,202,606	+		Pf6N2E2_2709	0.72	+1.0
3,202,606	+		Pf6N2E2_2709	0.72	-0.2
3,202,607	-		Pf6N2E2_2709	0.72	-0.0
3,202,607	-		Pf6N2E2_2709	0.72	-0.5
3,202,739	+		Pf6N2E2_2709	0.83	-0.0
3,202,739	+		Pf6N2E2_2709	0.83	+0.4
3,202,740	-		Pf6N2E2_2709	0.83	-0.3
3,202,740	-		Pf6N2E2_2709	0.83	-0.3
3,202,772	+		Pf6N2E2_2709	0.85	+1.0
3,202,772	+		Pf6N2E2_2709	0.85	+1.0
3,202,773	-		Pf6N2E2_2709	0.85	+1.0
3,202,980	+				-0.0
3,202,980	+				+1.0
3,202,981	-				+1.0
3,202,988	+				+1.0
3,202,988	+				-1.9
3,202,988	+				+1.0
3,202,988	+				+1.2
3,202,989	-				-0.6
3,202,989	-				-5.2
3,202,989	-				+1.0
3,202,989	-				-0.0
3,202,989	-				+1.0
3,202,989	-				-0.6
3,202,989	-				-0.3
3,202,989	-				+1.0
3,202,989	-				+1.0
3,203,060	+				+0.4
3,203,079	+				-1.0
3,203,080	-				-0.0
3,203,133	+				+1.0
3,203,200	+				+3.5
3,203,207	+				+1.0
3,203,207	+				-0.0
3,203,207	+				-0.0
3,203,207	+				-0.5
3,203,207	+				+1.0
3,203,207	+				-1.1
3,203,208	-				+1.0
3,203,208	-				+1.2
3,203,208	-				-0.0
3,203,208	-				+1.0
3,203,328	+				-0.6
3,203,329	-				-0.3
3,203,406	-				-0.0
3,203,674	+		Pf6N2E2_2710	0.31	-0.6
3,203,675	-		Pf6N2E2_2710	0.31	+1.0
3,203,675	-		Pf6N2E2_2710	0.31	-0.4
3,203,675	-		Pf6N2E2_2710	0.31	-0.0
3,203,681	-		Pf6N2E2_2710	0.32	-0.0
3,203,747	-		Pf6N2E2_2710	0.44	-0.1
3,203,968	+		Pf6N2E2_2710	0.85	-0.1
3,204,033	+				-0.8
3,204,033	+				+1.0
3,204,033	+				-0.0
3,204,033	+				+1.0
3,204,034	-				-0.1
3,204,034	-				-1.0
3,204,034	-				+1.0
3,204,034	-				-0.2
3,204,034	-				+1.0
3,204,034	-				-1.8
3,204,034	-				+1.4
3,204,037	+				+1.0
3,204,037	+				+1.0
3,204,037	+				-0.0
3,204,037	+				+1.0
3,204,038	-				-0.0
3,204,038	-				-1.0
3,204,038	-				+1.0
3,204,038	-				+0.6
3,204,038	-				+0.8
3,204,050	+				+1.0
3,204,051	-				-0.3
3,204,051	-				+1.0
3,204,051	-				-0.0
3,204,051	-				-0.6
3,204,216	+		Pf6N2E2_2711	0.20	+1.0
3,204,217	-		Pf6N2E2_2711	0.20	-0.8
3,204,217	-		Pf6N2E2_2711	0.20	+1.0
3,204,217	-		Pf6N2E2_2711	0.20	+0.2
3,204,292	+		Pf6N2E2_2711	0.29	+1.0
3,204,379	-		Pf6N2E2_2711	0.41	+1.0
3,204,569	+		Pf6N2E2_2711	0.65	+1.0
3,204,570	-		Pf6N2E2_2711	0.65	+1.0
3,204,609	-		Pf6N2E2_2711	0.70	-0.0
3,204,609	-		Pf6N2E2_2711	0.70	+1.0
3,204,609	-		Pf6N2E2_2711	0.70	+0.2
3,204,718	+		Pf6N2E2_2711	0.84	-0.6
3,204,718	+		Pf6N2E2_2711	0.84	+0.5
3,204,718	+		Pf6N2E2_2711	0.84	-0.0
3,204,718	+		Pf6N2E2_2711	0.84	-0.0
3,204,719	-		Pf6N2E2_2711	0.84	+1.0
3,204,829	-				+1.0