Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2688

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
3,176,392	+		Pf6N2E2_2687	0.37	+1.0
3,176,416	+		Pf6N2E2_2687	0.39	+1.0
3,176,416	+		Pf6N2E2_2687	0.39	+1.0
3,176,416	+		Pf6N2E2_2687	0.39	+1.0
3,176,416	+		Pf6N2E2_2687	0.39	-0.6
3,176,416	+		Pf6N2E2_2687	0.39	-0.3
3,176,417	-		Pf6N2E2_2687	0.39	+1.0
3,176,417	-		Pf6N2E2_2687	0.39	+1.0
3,176,428	+		Pf6N2E2_2687	0.40	+1.0
3,176,429	-		Pf6N2E2_2687	0.40	-0.6
3,176,438	-		Pf6N2E2_2687	0.41	+1.0
3,176,606	-		Pf6N2E2_2687	0.56	+1.0
3,176,714	-		Pf6N2E2_2687	0.66	+1.0
3,176,714	-		Pf6N2E2_2687	0.66	+1.0
3,176,821	+		Pf6N2E2_2687	0.75	-0.6
3,176,822	-		Pf6N2E2_2687	0.75	-0.0
3,176,872	+		Pf6N2E2_2687	0.80	-0.2
3,176,872	+		Pf6N2E2_2687	0.80	-0.5
3,176,872	+		Pf6N2E2_2687	0.80	-0.6
3,176,873	-		Pf6N2E2_2687	0.80	+0.6
3,177,174	+				+1.0
3,177,174	+				+1.0
3,177,212	-				+1.0
3,177,229	-				-0.6
3,177,229	-				+0.4
3,177,707	+		Pf6N2E2_2688	0.41	-0.6
3,177,794	+		Pf6N2E2_2688	0.50	+1.0
3,177,815	-		Pf6N2E2_2688	0.52	-1.0
3,177,821	-		Pf6N2E2_2688	0.52	-0.0
3,177,821	-		Pf6N2E2_2688	0.52	+1.0
3,178,037	+		Pf6N2E2_2688	0.73	+1.0
3,178,192	+		Pf6N2E2_2688	0.88	-1.4
3,178,253	-				+1.0
3,178,316	+				+1.0
3,178,316	+				-0.6
3,178,415	-				-0.4
3,178,417	-				+1.0
3,178,417	-				-1.0
3,178,570	-		Pf6N2E2_2689	0.24	+1.0
3,178,629	-		Pf6N2E2_2689	0.29	-0.0
3,178,871	+		Pf6N2E2_2689	0.52	-0.0
3,178,872	-		Pf6N2E2_2689	0.52	-0.2
3,178,872	-		Pf6N2E2_2689	0.52	+1.0
3,178,878	-		Pf6N2E2_2689	0.52	+1.0
3,179,026	-		Pf6N2E2_2689	0.66	-0.6
3,179,118	+		Pf6N2E2_2689	0.75	-0.0
3,179,137	+		Pf6N2E2_2689	0.76	-0.6
3,179,277	+		Pf6N2E2_2689	0.89	-0.3
3,179,278	-		Pf6N2E2_2689	0.89	-1.6
3,179,309	+				+1.0
3,179,310	-				-0.0
3,179,310	-				-0.4