Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2624

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
3,084,964	+		Pf6N2E2_2623	0.68	-0.8
3,084,964	+		Pf6N2E2_2623	0.68	-0.0
3,084,965	-		Pf6N2E2_2623	0.68	-1.4
3,084,965	-		Pf6N2E2_2623	0.68	+0.2
3,084,965	-		Pf6N2E2_2623	0.68	-1.9
3,085,429	+				-0.0
3,085,436	+				+1.0
3,085,437	-				-0.5
3,085,437	-				-1.0
3,085,437	-				-0.0
3,085,437	-				+1.0
3,085,437	-				-0.6
3,085,437	-				-0.0
3,085,438	+				-0.0
3,085,438	+				+1.0
3,085,438	+				-1.2
3,085,438	+				+1.0
3,085,438	+				-0.6
3,085,439	-				+1.0
3,085,537	+				+1.0
3,085,617	+				-0.6
3,085,617	+				-0.6
3,085,617	+				-0.6
3,085,617	+				+1.0
3,085,617	+				-0.6
3,085,617	+				-0.0
3,085,617	+				-0.8
3,085,618	-				+1.0
3,085,618	-				+1.0
3,085,618	-				+2.0
3,085,618	-				-0.0
3,085,618	-				+1.0
3,085,618	-				+0.4
3,085,620	-				+1.0
3,085,646	+				+1.0
3,085,646	+				-0.0
3,085,647	-				+1.0
3,085,647	-				+1.0
3,085,647	-				+1.0
3,085,647	-				+0.2
3,085,648	+				-0.0
3,085,648	+				-0.2
3,085,648	+				-0.0
3,085,648	+				-0.0
3,085,649	-				-0.4
3,085,649	-				+1.0
3,085,649	-				+1.0
3,085,705	+				-1.4
3,085,705	+				-1.2
3,085,706	-				-2.0
3,085,727	+				+0.5
3,085,728	-				+1.0
3,085,728	-				+1.0
3,085,745	+				-0.0
3,085,863	-		Pf6N2E2_2624	0.17	-0.6
3,085,872	-		Pf6N2E2_2624	0.17	+1.0
3,085,872	-		Pf6N2E2_2624	0.17	+1.0
3,086,061	-		Pf6N2E2_2624	0.32	+0.4
3,086,189	+		Pf6N2E2_2624	0.42	-0.3
3,086,448	+		Pf6N2E2_2624	0.62	+0.8
3,086,520	+		Pf6N2E2_2624	0.67	-0.0
3,086,520	+		Pf6N2E2_2624	0.67	+1.0
3,086,521	-		Pf6N2E2_2624	0.67	-0.0
3,086,521	-		Pf6N2E2_2624	0.67	-0.1
3,086,521	-		Pf6N2E2_2624	0.67	-0.3
3,086,521	-		Pf6N2E2_2624	0.67	+1.0
3,086,708	+		Pf6N2E2_2624	0.81	+1.0
3,086,709	-		Pf6N2E2_2624	0.82	+1.0
3,086,709	-		Pf6N2E2_2624	0.82	+0.1
3,086,720	+		Pf6N2E2_2624	0.82	+1.0
3,086,901	-				+1.0
3,086,901	-				-0.6
3,086,940	+				+1.0
3,086,941	-				+1.0
3,086,962	+				-0.0
3,086,962	+				+1.0
3,086,962	+				-0.0
3,086,963	-				-0.3
3,086,963	-				-0.6
3,087,352	+		Pf6N2E2_2625	0.35	+0.6
3,087,353	-		Pf6N2E2_2625	0.35	-0.0
3,087,353	-		Pf6N2E2_2625	0.35	-0.6
3,087,353	-		Pf6N2E2_2625	0.35	+1.0
3,087,353	-		Pf6N2E2_2625	0.35	-0.0
3,087,658	+		Pf6N2E2_2625	0.63	-0.0
3,087,658	+		Pf6N2E2_2625	0.63	+2.0