Experiment: Ying_OrganicAcid7 rep B; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_253 and Pf6N2E2_254 are separated by 146 nucleotides Pf6N2E2_254 and Pf6N2E2_255 overlap by 4 nucleotides Pf6N2E2_255 and Pf6N2E2_256 overlap by 8 nucleotides
Pf6N2E2_253 - Non-heme chloroperoxidase (EC 1.11.1.10), at 317,279 to 318,100
_253
Pf6N2E2_254 - Transcriptional regulator, LysR family, at 318,247 to 319,194
_254
Pf6N2E2_255 - DoxX family protein, at 319,191 to 319,604
_255
Pf6N2E2_256 - putative membrane protein, at 319,597 to 320,235
_256
Position (kb) 318
319
320 Strain fitness (log2 ratio) -1
0
1 at 317.247 kb on - strand at 317.294 kb on - strand at 317.315 kb on + strand at 317.315 kb on + strand at 317.315 kb on + strand at 317.316 kb on - strand at 317.316 kb on - strand at 317.316 kb on - strand at 317.316 kb on - strand at 317.318 kb on + strand at 317.318 kb on + strand at 317.319 kb on - strand at 317.742 kb on + strand, within Pf6N2E2_253 at 317.743 kb on - strand, within Pf6N2E2_253 at 317.744 kb on + strand, within Pf6N2E2_253 at 317.744 kb on + strand, within Pf6N2E2_253 at 317.744 kb on + strand, within Pf6N2E2_253 at 317.744 kb on + strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.745 kb on - strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.858 kb on + strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.859 kb on - strand, within Pf6N2E2_253 at 317.931 kb on + strand, within Pf6N2E2_253 at 318.107 kb on + strand at 318.107 kb on + strand at 318.107 kb on + strand at 318.108 kb on - strand at 318.712 kb on + strand, within Pf6N2E2_254 at 318.712 kb on + strand, within Pf6N2E2_254 at 318.817 kb on + strand, within Pf6N2E2_254 at 318.818 kb on - strand, within Pf6N2E2_254 at 318.818 kb on - strand, within Pf6N2E2_254 at 318.818 kb on - strand, within Pf6N2E2_254 at 318.818 kb on - strand, within Pf6N2E2_254 at 318.988 kb on + strand, within Pf6N2E2_254 at 319.299 kb on + strand, within Pf6N2E2_255 at 319.299 kb on + strand, within Pf6N2E2_255 at 319.299 kb on + strand, within Pf6N2E2_255 at 319.300 kb on - strand, within Pf6N2E2_255 at 319.300 kb on - strand, within Pf6N2E2_255 at 319.525 kb on + strand, within Pf6N2E2_255 at 319.525 kb on + strand, within Pf6N2E2_255 at 319.526 kb on - strand, within Pf6N2E2_255 at 319.526 kb on - strand, within Pf6N2E2_255 at 319.537 kb on + strand, within Pf6N2E2_255 at 319.537 kb on + strand, within Pf6N2E2_255 at 319.538 kb on - strand, within Pf6N2E2_255 at 319.538 kb on - strand, within Pf6N2E2_255 at 319.733 kb on + strand, within Pf6N2E2_256 at 319.734 kb on - strand, within Pf6N2E2_256 at 320.092 kb on + strand, within Pf6N2E2_256 at 320.092 kb on + strand, within Pf6N2E2_256 at 320.092 kb on + strand, within Pf6N2E2_256 at 320.092 kb on + strand, within Pf6N2E2_256 at 320.093 kb on - strand, within Pf6N2E2_256 at 320.093 kb on - strand, within Pf6N2E2_256 at 320.093 kb on - strand, within Pf6N2E2_256 at 320.093 kb on - strand, within Pf6N2E2_256 at 320.143 kb on + strand, within Pf6N2E2_256 at 320.144 kb on - strand, within Pf6N2E2_256 at 320.144 kb on - strand, within Pf6N2E2_256 at 320.144 kb on - strand, within Pf6N2E2_256 at 320.144 kb on - strand, within Pf6N2E2_256 at 320.144 kb on - strand, within Pf6N2E2_256
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2 remove 317,247 - -1.7 317,294 - -0.4 317,315 + +0.9 317,315 + -0.6 317,315 + -0.8 317,316 - -0.1 317,316 - +0.9 317,316 - -1.1 317,316 - +0.9 317,318 + +0.2 317,318 + -0.1 317,319 - +0.9 317,742 + Pf6N2E2_253 0.56 +0.9 317,743 - Pf6N2E2_253 0.56 -0.1 317,744 + Pf6N2E2_253 0.57 +0.9 317,744 + Pf6N2E2_253 0.57 -0.5 317,744 + Pf6N2E2_253 0.57 -1.2 317,744 + Pf6N2E2_253 0.57 +0.9 317,745 - Pf6N2E2_253 0.57 +0.9 317,745 - Pf6N2E2_253 0.57 -0.6 317,745 - Pf6N2E2_253 0.57 -0.7 317,745 - Pf6N2E2_253 0.57 +0.9 317,745 - Pf6N2E2_253 0.57 -0.1 317,858 + Pf6N2E2_253 0.70 +0.9 317,858 + Pf6N2E2_253 0.70 +0.9 317,858 + Pf6N2E2_253 0.70 +0.9 317,858 + Pf6N2E2_253 0.70 +0.9 317,858 + Pf6N2E2_253 0.70 +0.9 317,858 + Pf6N2E2_253 0.70 -0.8 317,858 + Pf6N2E2_253 0.70 +0.9 317,858 + Pf6N2E2_253 0.70 +0.9 317,858 + Pf6N2E2_253 0.70 +0.9 317,858 + Pf6N2E2_253 0.70 -0.1 317,859 - Pf6N2E2_253 0.71 -0.1 317,859 - Pf6N2E2_253 0.71 +0.9 317,859 - Pf6N2E2_253 0.71 +0.9 317,859 - Pf6N2E2_253 0.71 -0.3 317,859 - Pf6N2E2_253 0.71 +0.9 317,859 - Pf6N2E2_253 0.71 -0.2 317,859 - Pf6N2E2_253 0.71 -0.5 317,859 - Pf6N2E2_253 0.71 -0.1 317,931 + Pf6N2E2_253 0.79 -0.1 318,107 + +0.9 318,107 + +0.9 318,107 + +0.9 318,108 - -1.0 318,712 + Pf6N2E2_254 0.49 -0.0 318,712 + Pf6N2E2_254 0.49 +0.9 318,817 + Pf6N2E2_254 0.60 +0.9 318,818 - Pf6N2E2_254 0.60 -0.3 318,818 - Pf6N2E2_254 0.60 +0.9 318,818 - Pf6N2E2_254 0.60 +0.9 318,818 - Pf6N2E2_254 0.60 +0.9 318,988 + Pf6N2E2_254 0.78 -0.1 319,299 + Pf6N2E2_255 0.26 -0.1 319,299 + Pf6N2E2_255 0.26 +0.9 319,299 + Pf6N2E2_255 0.26 +0.9 319,300 - Pf6N2E2_255 0.26 +0.9 319,300 - Pf6N2E2_255 0.26 -0.7 319,525 + Pf6N2E2_255 0.81 +0.9 319,525 + Pf6N2E2_255 0.81 +0.9 319,526 - Pf6N2E2_255 0.81 -0.1 319,526 - Pf6N2E2_255 0.81 +0.9 319,537 + Pf6N2E2_255 0.84 +0.9 319,537 + Pf6N2E2_255 0.84 -0.1 319,538 - Pf6N2E2_255 0.84 +0.9 319,538 - Pf6N2E2_255 0.84 -0.1 319,733 + Pf6N2E2_256 0.21 +0.9 319,734 - Pf6N2E2_256 0.21 -0.0 320,092 + Pf6N2E2_256 0.77 +0.9 320,092 + Pf6N2E2_256 0.77 -0.1 320,092 + Pf6N2E2_256 0.77 +0.9 320,092 + Pf6N2E2_256 0.77 -0.1 320,093 - Pf6N2E2_256 0.78 +0.9 320,093 - Pf6N2E2_256 0.78 +0.9 320,093 - Pf6N2E2_256 0.78 -1.7 320,093 - Pf6N2E2_256 0.78 +0.9 320,143 + Pf6N2E2_256 0.85 -0.1 320,144 - Pf6N2E2_256 0.86 -0.1 320,144 - Pf6N2E2_256 0.86 -0.1 320,144 - Pf6N2E2_256 0.86 +0.9 320,144 - Pf6N2E2_256 0.86 +0.9 320,144 - Pf6N2E2_256 0.86 -0.2
Or see this region's nucleotide sequence