Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2196

Experiment: Ying_OrganicAcid7 rep B; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2194 and Pf6N2E2_2195 are separated by 29 nucleotidesPf6N2E2_2195 and Pf6N2E2_2196 are separated by 122 nucleotidesPf6N2E2_2196 and Pf6N2E2_2197 are separated by 499 nucleotides Pf6N2E2_2194 - 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data), at 2,600,323 to 2,602,272 _2194 Pf6N2E2_2195 - cI, at 2,602,302 to 2,602,958 _2195 Pf6N2E2_2196 - FIG00953347: hypothetical protein, at 2,603,081 to 2,603,422 _2196 Pf6N2E2_2197 - Predicted carboxypeptidase, at 2,603,922 to 2,605,067 _2197 Position (kb) 2603 2604Strain fitness (log2 ratio) -2 -1 0 1 2at 2602.089 kb on + strandat 2602.090 kb on - strandat 2602.090 kb on - strandat 2602.213 kb on + strandat 2602.213 kb on + strandat 2602.214 kb on - strandat 2602.270 kb on + strandat 2602.270 kb on + strandat 2602.357 kb on + strandat 2602.357 kb on + strandat 2602.358 kb on - strandat 2602.397 kb on - strand, within Pf6N2E2_2195at 2602.627 kb on + strand, within Pf6N2E2_2195at 2602.628 kb on - strand, within Pf6N2E2_2195at 2602.703 kb on - strand, within Pf6N2E2_2195at 2602.936 kb on - strandat 2602.943 kb on + strandat 2602.944 kb on - strandat 2602.944 kb on - strandat 2602.961 kb on + strandat 2602.962 kb on - strandat 2602.962 kb on - strandat 2603.086 kb on + strandat 2603.086 kb on + strandat 2603.087 kb on - strandat 2603.175 kb on - strand, within Pf6N2E2_2196at 2603.175 kb on - strand, within Pf6N2E2_2196at 2603.175 kb on - strand, within Pf6N2E2_2196at 2603.177 kb on + strand, within Pf6N2E2_2196at 2603.177 kb on + strand, within Pf6N2E2_2196at 2603.177 kb on + strand, within Pf6N2E2_2196at 2603.178 kb on - strand, within Pf6N2E2_2196at 2603.178 kb on - strand, within Pf6N2E2_2196at 2603.517 kb on - strandat 2603.550 kb on + strandat 2603.565 kb on + strandat 2603.565 kb on + strandat 2603.565 kb on + strandat 2603.565 kb on + strandat 2603.565 kb on + strandat 2603.565 kb on + strandat 2603.566 kb on - strandat 2603.583 kb on + strandat 2603.583 kb on + strandat 2603.583 kb on + strandat 2603.583 kb on + strandat 2603.657 kb on - strandat 2603.713 kb on + strandat 2603.724 kb on + strandat 2603.764 kb on + strandat 2603.765 kb on - strandat 2603.803 kb on + strandat 2603.804 kb on - strandat 2603.804 kb on - strandat 2603.841 kb on + strandat 2603.842 kb on - strandat 2603.842 kb on - strandat 2603.842 kb on - strandat 2603.850 kb on + strandat 2603.850 kb on + strandat 2603.851 kb on - strandat 2603.851 kb on - strandat 2603.881 kb on + strandat 2603.881 kb on + strandat 2603.881 kb on + strandat 2603.881 kb on + strandat 2603.882 kb on - strandat 2603.882 kb on - strandat 2603.882 kb on - strandat 2603.886 kb on + strandat 2603.886 kb on + strandat 2603.887 kb on - strandat 2603.927 kb on + strandat 2603.943 kb on - strandat 2604.090 kb on + strand, within Pf6N2E2_2197at 2604.090 kb on + strand, within Pf6N2E2_2197at 2604.090 kb on + strand, within Pf6N2E2_2197at 2604.090 kb on + strand, within Pf6N2E2_2197at 2604.127 kb on - strand, within Pf6N2E2_2197at 2604.165 kb on + strand, within Pf6N2E2_2197at 2604.166 kb on - strand, within Pf6N2E2_2197at 2604.261 kb on + strand, within Pf6N2E2_2197at 2604.273 kb on + strand, within Pf6N2E2_2197at 2604.274 kb on - strand, within Pf6N2E2_2197at 2604.274 kb on - strand, within Pf6N2E2_2197

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_OrganicAcid7 rep B; time point 2
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2,602,089 + -0.1
2,602,090 - -0.1
2,602,090 - +0.9
2,602,213 + -0.1
2,602,213 + +0.9
2,602,214 - -0.1
2,602,270 + -0.1
2,602,270 + -0.6
2,602,357 + -2.1
2,602,357 + -0.1
2,602,358 - +0.9
2,602,397 - Pf6N2E2_2195 0.14 -1.1
2,602,627 + Pf6N2E2_2195 0.49 +0.9
2,602,628 - Pf6N2E2_2195 0.50 -0.7
2,602,703 - Pf6N2E2_2195 0.61 -0.1
2,602,936 - -1.1
2,602,943 + -0.1
2,602,944 - +0.1
2,602,944 - +0.9
2,602,961 + +0.9
2,602,962 - +0.1
2,602,962 - -0.5
2,603,086 + +0.9
2,603,086 + +0.9
2,603,087 - +0.9
2,603,175 - Pf6N2E2_2196 0.27 -0.1
2,603,175 - Pf6N2E2_2196 0.27 +0.9
2,603,175 - Pf6N2E2_2196 0.27 +0.9
2,603,177 + Pf6N2E2_2196 0.28 -0.1
2,603,177 + Pf6N2E2_2196 0.28 -0.7
2,603,177 + Pf6N2E2_2196 0.28 -0.7
2,603,178 - Pf6N2E2_2196 0.28 +0.9
2,603,178 - Pf6N2E2_2196 0.28 -1.4
2,603,517 - -0.1
2,603,550 + +0.9
2,603,565 + -1.9
2,603,565 + +0.9
2,603,565 + +0.9
2,603,565 + -1.1
2,603,565 + -0.8
2,603,565 + +0.9
2,603,566 - -2.7
2,603,583 + +0.9
2,603,583 + +0.9
2,603,583 + -1.5
2,603,583 + +0.9
2,603,657 - -0.7
2,603,713 + +0.9
2,603,724 + -0.7
2,603,764 + +0.9
2,603,765 - +0.3
2,603,803 + -0.1
2,603,804 - -0.1
2,603,804 - -0.1
2,603,841 + -0.7
2,603,842 - -0.8
2,603,842 - -0.7
2,603,842 - +0.9
2,603,850 + -1.3
2,603,850 + -0.1
2,603,851 - +0.9
2,603,851 - +0.9
2,603,881 + +0.9
2,603,881 + +0.3
2,603,881 + -0.7
2,603,881 + +0.9
2,603,882 - +1.9
2,603,882 - -0.0
2,603,882 - -0.3
2,603,886 + +0.9
2,603,886 + +0.9
2,603,887 - -1.1
2,603,927 + +0.3
2,603,943 - -0.7
2,604,090 + Pf6N2E2_2197 0.15 -0.3
2,604,090 + Pf6N2E2_2197 0.15 +0.9
2,604,090 + Pf6N2E2_2197 0.15 +0.9
2,604,090 + Pf6N2E2_2197 0.15 -0.1
2,604,127 - Pf6N2E2_2197 0.18 -0.6
2,604,165 + Pf6N2E2_2197 0.21 +0.9
2,604,166 - Pf6N2E2_2197 0.21 +0.9
2,604,261 + Pf6N2E2_2197 0.30 +0.9
2,604,273 + Pf6N2E2_2197 0.31 +1.3
2,604,274 - Pf6N2E2_2197 0.31 +0.9
2,604,274 - Pf6N2E2_2197 0.31 +0.9

Or see this region's nucleotide sequence