Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2175

Experiment: Ying_OrganicAcid7 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep B; time point 2
2,579,768	+				+0.9
2,579,768	+				+0.9
2,579,768	+				+0.9
2,579,768	+				+0.9
2,579,768	+				+0.9
2,579,768	+				-0.5
2,579,768	+				-0.7
2,579,769	-				+0.9
2,579,769	-				+0.9
2,579,769	-				-0.7
2,579,769	-				+0.9
2,579,769	-				-0.4
2,579,769	-				+0.9
2,579,769	-				+0.9
2,579,769	-				+0.6
2,579,769	-				+0.9
2,579,769	-				+0.9
2,579,784	+				-0.5
2,579,786	+				+0.9
2,579,786	+				+0.9
2,579,786	+				-0.1
2,579,786	+				-1.7
2,579,787	-				-2.3
2,579,798	+				+0.9
2,579,798	+				+0.9
2,579,799	-				-0.1
2,579,799	-				-0.5
2,579,799	-				-0.1
2,579,799	-				+0.9
2,579,818	+				+0.9
2,579,819	-				+0.9
2,579,851	+				+0.9
2,579,860	+				-0.1
2,579,861	-				-0.7
2,579,881	+				+0.9
2,579,881	+				-0.1
2,579,881	+				-1.0
2,579,882	-				+1.9
2,579,882	-				-0.2
2,579,923	+				-0.7
2,579,924	-				+0.9
2,579,924	-				-1.2
2,579,942	-				+0.9
2,579,942	-				-1.9
2,579,942	-				+0.9
2,579,951	+				+0.9
2,579,955	+				+0.9
2,579,955	+				-0.2
2,579,956	-				+0.9
2,579,956	-				+0.9
2,579,959	+				+0.9
2,579,960	-				-0.7
2,579,975	+				+0.9
2,579,976	-				+0.9
2,580,418	+		Pf6N2E2_2175	0.47	+0.5
2,580,418	+		Pf6N2E2_2175	0.47	-0.3
2,580,418	+		Pf6N2E2_2175	0.47	-0.1
2,580,459	+		Pf6N2E2_2175	0.52	-1.1
2,580,459	+		Pf6N2E2_2175	0.52	+0.2
2,580,660	+		Pf6N2E2_2175	0.75	+0.9
2,580,867	+				+1.5
2,580,867	+				+0.9
2,581,008	-		Pf6N2E2_2176	0.21	-0.6
2,581,277	+		Pf6N2E2_2176	0.63	+0.9
2,581,412	+		Pf6N2E2_2176	0.84	-1.2
2,581,413	-		Pf6N2E2_2176	0.84	+0.9
2,581,457	+				+0.3
2,581,633	+				+0.0
2,581,633	+				-0.4
2,581,634	-				-0.3
2,581,634	-				-0.5
2,581,634	-				-0.2
2,581,721	-		Pf6N2E2_2177	0.15	-1.2
2,581,807	-		Pf6N2E2_2177	0.22	-1.7